CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACP2 (Xylose isomerase OS=Bacillus pumilus (strain SAFR-032) GN=xylA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.561e-40
Identity = 75/131 (57.25%), Postives = 99/131 (75.57%), Query Frame = 2
Query:    5 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            DAAT+  FL++YGL   FKLNIE NHATL+GH+  H++  AR++GLLG++DAN G+  +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S ++ED+  AHI GMD  A+GLR A +LIED
Sbjct:  252 DAATSIAFLKQYGLDTHFKLNIEANHATLAGHTFEHELRVARIHGLLGSVDANQGNTLLGWDTDEFPTDLYATTLAMYEILQNGGLGTGGLNFDAKVRRASFELEDILYAHIAGMDAFAKGLRVAHRLIED 382          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERPY (Xylose isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERPS (Xylose isomerase OS=Yersinia pseudotuberculosis GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERPP (Xylose isomerase OS=Yersinia pestis (strain Pestoides F) GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERPN (Xylose isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERPG (Xylose isomerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERPE (Xylose isomerase OS=Yersinia pestis GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERPB (Xylose isomerase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERPA (Xylose isomerase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERP3 (Xylose isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=xylA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.957e-40
Identity = 75/133 (56.39%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDG 377          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_BACP24.561e-4057.25Xylose isomerase OS=Bacillus pumilus (strain SAFR-... [more]
XYLA_YERPY5.957e-4056.39Xylose isomerase OS=Yersinia pseudotuberculosis se... [more]
XYLA_YERPS5.957e-4056.39Xylose isomerase OS=Yersinia pseudotuberculosis GN... [more]
XYLA_YERPP5.957e-4056.39Xylose isomerase OS=Yersinia pestis (strain Pestoi... [more]
XYLA_YERPN5.957e-4056.39Xylose isomerase OS=Yersinia pestis bv. Antiqua (s... [more]
XYLA_YERPG5.957e-4056.39Xylose isomerase OS=Yersinia pestis bv. Antiqua (s... [more]
XYLA_YERPE5.957e-4056.39Xylose isomerase OS=Yersinia pestis GN=xylA PE=3 S... [more]
XYLA_YERPB5.957e-4056.39Xylose isomerase OS=Yersinia pseudotuberculosis se... [more]
XYLA_YERPA5.957e-4056.39Xylose isomerase OS=Yersinia pestis bv. Antiqua (s... [more]
XYLA_YERP35.957e-4056.39Xylose isomerase OS=Yersinia pseudotuberculosis se... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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