CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECOLC (Xylose isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECOL6 (Xylose isomerase OS=Escherichia coli O6 GN=xylA PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECOL5 (Xylose isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECOHS (Xylose isomerase OS=Escherichia coli O9:H4 (strain HS) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECODH (Xylose isomerase OS=Escherichia coli (strain K12 / DH10B) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECOBW (Xylose isomerase OS=Escherichia coli (strain K12 / BW2952) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO8A (Xylose isomerase OS=Escherichia coli O8 (strain IAI1) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO81 (Xylose isomerase OS=Escherichia coli O81 (strain ED1a) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO7I (Xylose isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
[Close]
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO55 (Xylose isomerase OS=Escherichia coli (strain 55989 / EAEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2 
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_ECOLC1.327e-3957.14Xylose isomerase OS=Escherichia coli (strain ATCC ... [more]
XYLA_ECOL61.327e-3957.14Xylose isomerase OS=Escherichia coli O6 GN=xylA PE... [more]
XYLA_ECOL51.327e-3957.14Xylose isomerase OS=Escherichia coli O6:K15:H31 (s... [more]
XYLA_ECOHS1.327e-3957.14Xylose isomerase OS=Escherichia coli O9:H4 (strain... [more]
XYLA_ECODH1.327e-3957.14Xylose isomerase OS=Escherichia coli (strain K12 /... [more]
XYLA_ECOBW1.327e-3957.14Xylose isomerase OS=Escherichia coli (strain K12 /... [more]
XYLA_ECO8A1.327e-3957.14Xylose isomerase OS=Escherichia coli O8 (strain IA... [more]
XYLA_ECO811.327e-3957.14Xylose isomerase OS=Escherichia coli O81 (strain E... [more]
XYLA_ECO7I1.327e-3957.14Xylose isomerase OS=Escherichia coli O7:K1 (strain... [more]
XYLA_ECO551.327e-3957.14Xylose isomerase OS=Escherichia coli (strain 55989... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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