CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO45 (Xylose isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO27 (Xylose isomerase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO24 (Xylose isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.327e-39
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_YERE8 (Xylose isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=xylA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.733e-39
Identity = 74/133 (55.64%), Postives = 96/133 (72.18%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPNSVEENALVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAAKMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_PECCP (Xylose isomerase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=xylA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.733e-39
Identity = 75/132 (56.82%), Postives = 97/132 (73.48%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+++GL  + K+N+E NHATL+GHS HH+I TA   G+ G++DAN GDPQ+GWDTDQF   + E TLIM  ++K GG   GG NFDAK+RR+STD  DLF AHI  MDT+A  L+ AA++IED
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNVEANHATLAGHSFHHEIATAVALGVFGSVDANRGDPQLGWDTDQFPNSVEENTLIMYEILKAGGFTTGGLNFDAKVRRQSTDRYDLFHAHIGAMDTMALALKAAARMIED 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ERWCT (Xylose isomerase OS=Erwinia carotovora subsp. atroseptica GN=xylA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.733e-39
Identity = 75/132 (56.82%), Postives = 97/132 (73.48%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+++GL  + K+N+E NHATL+GHS HH+I TA   G+ G++DAN GDPQ+GWDTDQF   + E TLIM  ++K GG   GG NFDAK+RR+STD  DLF AHI  MDT+A  L+ AA++IED
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNVEANHATLAGHSFHHEIATAVALGVFGSVDANRGDPQLGWDTDQFPNSVEENTLIMYEILKAGGFTTGGLNFDAKVRRQSTDRYDLFHAHIGAMDTMALALKAAARMIED 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACSW (Xylose isomerase OS=Bacillus sp. (strain LW2) GN=xylA PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.733e-39
Identity = 76/132 (57.58%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D ATA  FL+ YGL + FK NIE NHATL+GH+  H++  AR++G+LG++DAN GD  +GWDTD+F TD+   TL M  ++KNGGL  GG NFDAK+RR S + EDLF AHI GMD+ A GL+ A +LIED
Sbjct:  243 FDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIED 374          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACST (Xylose isomerase OS=Bacillus stearothermophilus GN=xylA PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.733e-39
Identity = 76/132 (57.58%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D ATA  FL+ YGL + FK NIE NHATL+GH+  H++  AR++G+LG++DAN GD  +GWDTD+F TD+   TL M  ++KNGGL  GG NFDAK+RR S + EDLF AHI GMD+ A GL+ A +LIED
Sbjct:  243 FDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIED 374          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_HAES2 (Xylose isomerase OS=Haemophilus somnus (strain 2336) GN=xylA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.264e-39
Identity = 76/132 (57.58%), Postives = 96/132 (72.73%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+++GL N+ K+NIE NHATL+GH+  H+I TA   G+ G+IDAN GDPQ+GWDTDQF   + E TL M  ++K GG   GGFNFDAK+RR+STD  DLF AHI  MD +A  L+ AAK+IED
Sbjct:  245 YDVATVYGFLKQFGLENEIKVNIEANHATLAGHTFQHEIATATSLGIFGSIDANRGDPQLGWDTDQFPNSVEENTLAMYEILKAGGFTTGGFNFDAKIRRQSTDPYDLFHAHIGAMDVLALSLKRAAKMIED 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ENT38 (Xylose isomerase OS=Enterobacter sp. (strain 638) GN=xylA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.956e-39
Identity = 74/133 (55.64%), Postives = 96/133 (72.18%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I +A   G+ G++DAN GDPQ+GWDTDQF   + E  L+M  +IK GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIASAIALGIFGSVDANRGDPQLGWDTDQFPISVEENALVMYEIIKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKVAARMIEDG 377          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_ECO451.327e-3957.14Xylose isomerase OS=Escherichia coli O45:K1 (strai... [more]
XYLA_ECO271.327e-3957.14Xylose isomerase OS=Escherichia coli O127:H6 (stra... [more]
XYLA_ECO241.327e-3957.14Xylose isomerase OS=Escherichia coli O139:H28 (str... [more]
XYLA_YERE81.733e-3955.64Xylose isomerase OS=Yersinia enterocolitica seroty... [more]
XYLA_PECCP1.733e-3956.82Xylose isomerase OS=Pectobacterium carotovorum sub... [more]
XYLA_ERWCT1.733e-3956.82Xylose isomerase OS=Erwinia carotovora subsp. atro... [more]
XYLA_BACSW1.733e-3957.58Xylose isomerase OS=Bacillus sp. (strain LW2) GN=x... [more]
XYLA_BACST1.733e-3957.58Xylose isomerase OS=Bacillus stearothermophilus GN... [more]
XYLA_HAES22.264e-3957.58Xylose isomerase OS=Haemophilus somnus (strain 233... [more]
XYLA_ENT382.956e-3955.64Xylose isomerase OS=Enterobacter sp. (strain 638) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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