CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SERP5 (Xylose isomerase OS=Serratia proteamaculans (strain 568) GN=xylA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.861e-39
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GDPQ+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK++ DG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDPQLGWDTDQFPISVEENALVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKVAAKMVTDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_GEOKA (Xylose isomerase OS=Geobacillus kaustophilus GN=xylA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.043e-39
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D ATA  FL+ YGL + FK NIE NHATL+GH+  H++  AR++G+LG++DAN GD  +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S + EDLF AHI GMD+ A GL+ A +L+ED
Sbjct:  243 FDVATALAFLQTYGLKDHFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDTLLGWDTDEFPTDLYTTTLAMYEILQNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAIGLKVAHRLLED 374          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO5E (Xylose isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.043e-39
Identity = 76/133 (57.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA +IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAACMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ECO57 (Xylose isomerase OS=Escherichia coli O157:H7 GN=xylA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.043e-39
Identity = 76/133 (57.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAAT   FL+++GL  + KLNIE NHATL+GHS HH+I TA   GL G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA +IEDG
Sbjct:  245 YDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAACMIEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_PHOPR (Xylose isomerase OS=Photobacterium profundum GN=xylA PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.586e-39
Identity = 75/132 (56.82%), Postives = 94/132 (71.21%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+++GL N+ K+NIE NHATL+GHS  H+I TA   GL G+IDAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GGFNFD+ +RR S D EDLF  HI GMDT+A  L  AA +IE+
Sbjct:  245 YDTATVYGFLKQFGLENEIKVNIEANHATLAGHSFQHEIATATSLGLFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTGGFNFDSHVRRPSIDAEDLFYGHIGGMDTMALALERAANMIEN 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_TETHA (Xylose isomerase OS=Tetragenococcus halophilus GN=xylA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.601e-39
Identity = 76/132 (57.58%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +DAATA  F++KY L + FKLN+E NHATL+GH+  H++  A+    LG++DAN GD  +GWDTD+F TDI  ATL M  V+  GG+APGG NFDAK+RR S  ++DL +AHI GMDT ARGLR AAK+ +D
Sbjct:  243 YDAATAMAFIQKYNLEDSFKLNLEANHATLAGHTFEHELNVAKNYNALGSLDANQGDLLLGWDTDEFPTDIYTATLAMYEVLDFGGIAPGGLNFDAKVRRTSFAMDDLILAHIAGMDTYARGLRAAAKMKDD 374          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_STAXY (Xylose isomerase OS=Staphylococcus xylosus GN=xylA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.123e-38
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = 2
Query:    5 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            D ATA  FL+KY L  DFK NIE NHATL+GH+  H++  AR N +LG++DAN G P +GWDTD+  TD+ + TL M  ++KNGGLAPGG NFDAK RR S   EDL + HI GMDT A GLR A K+IED
Sbjct:  243 DVATAHAFLQKYDLDKDFKFNIEANHATLAGHTFQHELRYARDNNMLGSVDANQGHPLLGWDTDE-STDVYDTTLAMYEILKNGGLAPGGLNFDAKPRRTSFKQEDLILTHIAGMDTFALGLRVAYKMIED 372          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_GEOTN (Xylose isomerase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=xylA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.123e-38
Identity = 74/132 (56.06%), Postives = 98/132 (74.24%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D ATA  FL+ YGL + FK NIE NHATL+GH+  H++  AR++G+LG++DAN GD  +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S + EDLF AHI GMD+ A GL+ A +L+ED
Sbjct:  243 FDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYATTLAMYEILQNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAIGLKVAHRLLED 374          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACTN (Xylose isomerase OS=Bacteroides thetaiotaomicron GN=xylA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.123e-38
Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 2
Query:    5 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            D  T   FL+ +GL  DFK+NIE NHATL+GH+  H++  A  NG+LG+IDAN GD Q GWDTDQF  D  E T  M+ +I+NGGL  GG NFDAK RR STD+ED+FIAHI GMD +AR L +AA L+++
Sbjct:  248 DTETVIGFLKAHGLDKDFKVNIEVNHATLAGHTFEHELAVAVDNGMLGSIDANRGDYQNGWDTDQFPIDNYELTQAMMQIIRNGGLGTGGTNFDAKTRRNSTDLEDIFIAHIAGMDAMARALESAAALLDE 378          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THEYO (Xylose isomerase OS=Thermoanaerobacter yonseii GN=xylA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.916e-38
Identity = 78/133 (58.65%), Postives = 94/133 (70.68%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAA    FL+KYGL   FKLNIE NHATL+GH   H++  AR+N +LG+IDAN  D  +GWDTDQF TDI   TL M  VIK GG   GG NFDAK+RR S + EDLFIAHI GMD  A+G + A +L++DG
Sbjct:  244 FDAAHVYAFLKKYGLDKYFKLNIEVNHATLAGHEFQHELRYARINNILGSIDANMRDMLLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFIAHIAGMDAFAKGFKVAYRLVKDG 376          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_SERP53.861e-3954.89Xylose isomerase OS=Serratia proteamaculans (strai... [more]
XYLA_GEOKA5.043e-3956.06Xylose isomerase OS=Geobacillus kaustophilus GN=xy... [more]
XYLA_ECO5E5.043e-3957.14Xylose isomerase OS=Escherichia coli O157:H7 (stra... [more]
XYLA_ECO575.043e-3957.14Xylose isomerase OS=Escherichia coli O157:H7 GN=xy... [more]
XYLA_PHOPR6.586e-3956.82Xylose isomerase OS=Photobacterium profundum GN=xy... [more]
XYLA_TETHA8.601e-3957.58Xylose isomerase OS=Tetragenococcus halophilus GN=... [more]
XYLA_STAXY1.123e-3859.54Xylose isomerase OS=Staphylococcus xylosus GN=xylA... [more]
XYLA_GEOTN1.123e-3856.06Xylose isomerase OS=Geobacillus thermodenitrifican... [more]
XYLA_BACTN1.123e-3858.02Xylose isomerase OS=Bacteroides thetaiotaomicron G... [more]
XYLA_THEYO1.916e-3858.65Xylose isomerase OS=Thermoanaerobacter yonseii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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