CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THESA (Xylose isomerase OS=Thermoanaerobacter saccharolyticum GN=xylA PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.916e-38
Identity = 77/133 (57.89%), Postives = 93/133 (69.92%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D A    FLRKY L   FK+NIE NHATL+ H   H++  AR+NG+LG+IDANTGD  +GWDTDQF TDI   TL M  VIK GG   GG NFDAK+RR S + EDLF+ HI GMD  A+G + A KL++DG
Sbjct:  245 FDVANVLAFLRKYDLDKYFKVNIEANHATLAFHDFQHELRYARINGVLGSIDANTGDMLLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACV8 (Xylose isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.916e-38
Identity = 76/131 (58.02%), Postives = 94/131 (71.76%), Query Frame = 2
Query:    5 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            D  T   FL+ +GL  DFK+NIE NHATL+GH+  H++  A  NG+LG+IDAN GD Q GWDTDQF  D  E T  M+ +I+NGGL  GG NFDAK RR STD+ED+FIAHI GMD +AR L +AA L+ +
Sbjct:  248 DTETVVGFLKTHGLDKDFKVNIEVNHATLAGHTFEHELAVAVDNGMLGSIDANRGDYQNGWDTDQFPIDNYELTQAMMQIIRNGGLGNGGTNFDAKTRRNSTDLEDIFIAHIAGMDAMARALESAAALLNE 378          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THEPX (Xylose isomerase OS=Thermoanaerobacter sp. (strain X514) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 76/133 (57.14%), Postives = 94/133 (70.68%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAA+   FL+KY L   FKLNIE NHATL+GH   H++  AR+N +LG+IDAN GD  +GWDTDQ+ TDI   TL M  VIK GG   GG NFDAK+RR S + EDLF+ HI GMD  A+G + A KL++DG
Sbjct:  244 FDAASVHAFLKKYDLDKYFKLNIEANHATLAGHDFQHELRYARINNILGSIDANMGDMLLGWDTDQYPTDIRMTTLAMYEVIKMGGFNKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDG 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THEP3 (Xylose isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 76/133 (57.14%), Postives = 94/133 (70.68%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +DAA+   FL+KY L   FKLNIE NHATL+GH   H++  AR+N +LG+IDAN GD  +GWDTDQ+ TDI   TL M  VIK GG   GG NFDAK+RR S + EDLF+ HI GMD  A+G + A KL++DG
Sbjct:  244 FDAASVHAFLKKYDLDKYFKLNIEANHATLAGHDFQHELRYARINNMLGSIDANMGDMLLGWDTDQYPTDIRMTTLAMYEVIKMGGFNKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDG 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALTY (Xylose isomerase OS=Salmonella typhimurium GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALTI (Xylose isomerase OS=Salmonella typhi GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALSV (Xylose isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALPC (Xylose isomerase OS=Salmonella paratyphi C (strain RKS4594) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALPB (Xylose isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALPA (Xylose isomerase OS=Salmonella paratyphi A GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_THESA1.916e-3857.89Xylose isomerase OS=Thermoanaerobacter saccharolyt... [more]
XYLA_BACV81.916e-3858.02Xylose isomerase OS=Bacteroides vulgatus (strain A... [more]
XYLA_THEPX2.503e-3857.14Xylose isomerase OS=Thermoanaerobacter sp. (strain... [more]
XYLA_THEP32.503e-3857.14Xylose isomerase OS=Thermoanaerobacter pseudethano... [more]
XYLA_SALTY2.503e-3854.14Xylose isomerase OS=Salmonella typhimurium GN=xylA... [more]
XYLA_SALTI2.503e-3854.14Xylose isomerase OS=Salmonella typhi GN=xylA PE=3 ... [more]
XYLA_SALSV2.503e-3854.14Xylose isomerase OS=Salmonella schwarzengrund (str... [more]
XYLA_SALPC2.503e-3854.14Xylose isomerase OS=Salmonella paratyphi C (strain... [more]
XYLA_SALPB2.503e-3854.14Xylose isomerase OS=Salmonella paratyphi B (strain... [more]
XYLA_SALPA2.503e-3854.14Xylose isomerase OS=Salmonella paratyphi A GN=xylA... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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