CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALNS (Xylose isomerase OS=Salmonella newport (strain SL254) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALHS (Xylose isomerase OS=Salmonella heidelberg (strain SL476) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALG2 (Xylose isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALEP (Xylose isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALDC (Xylose isomerase OS=Salmonella dublin (strain CT_02021853) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALCH (Xylose isomerase OS=Salmonella choleraesuis GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_SALA4 (Xylose isomerase OS=Salmonella agona (strain SL483) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/133 (54.14%), Postives = 95/133 (71.43%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+ G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_BACSK (Xylose isomerase OS=Bacillus clausii (strain KSM-K16) GN=xylA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.503e-38
Identity = 72/132 (54.55%), Postives = 97/132 (73.48%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+ YGL + FK NIE NHATL+GH+  H++  AR++ +LG++DAN GDP +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S + +DLF AHI GMD+ A GL+ A +LI+D
Sbjct:  243 FDVATGYAFLQHYGLQDSFKFNIEANHATLAGHTFEHELRYARIHHMLGSVDANQGDPLLGWDTDEFPTDLYSTTLAMYEILQNGGLGRGGLNFDAKVRRGSFEADDLFFAHIAGMDSFAIGLKVAQQLIDD 374          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THENN (Xylose isomerase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=xylA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.269e-38
Identity = 77/133 (57.89%), Postives = 94/133 (70.68%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D ATA  FL+ +GL   FK NIE NHATL+GH+  H++  AR+ G LG+IDAN GD  +GWDTDQF T++ + TL M  VIK GG   GG NFDAK+RR S  VEDLFI HI GMDT A G + A KL++DG
Sbjct:  245 FDVATAYAFLKSHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGDLLLGWDTDQFPTNVYDTTLAMYEVIKAGGFTKGGLNFDAKVRRASYKVEDLFIGHIAGMDTFALGFKVAYKLVKDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THENE (Xylose isomerase OS=Thermotoga neapolitana GN=xylA PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.269e-38
Identity = 77/133 (57.89%), Postives = 94/133 (70.68%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D ATA  FL+ +GL   FK NIE NHATL+GH+  H++  AR+ G LG+IDAN GD  +GWDTDQF T++ + TL M  VIK GG   GG NFDAK+RR S  VEDLFI HI GMDT A G + A KL++DG
Sbjct:  245 FDVATAYAFLKSHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGDLLLGWDTDQFPTNVYDTTLAMYEVIKAGGFTKGGLNFDAKVRRASYKVEDLFIGHIAGMDTFALGFKVAYKLVKDG 377          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_SALNS2.503e-3854.14Xylose isomerase OS=Salmonella newport (strain SL2... [more]
XYLA_SALHS2.503e-3854.14Xylose isomerase OS=Salmonella heidelberg (strain ... [more]
XYLA_SALG22.503e-3854.14Xylose isomerase OS=Salmonella gallinarum (strain ... [more]
XYLA_SALEP2.503e-3854.14Xylose isomerase OS=Salmonella enteritidis PT4 (st... [more]
XYLA_SALDC2.503e-3854.14Xylose isomerase OS=Salmonella dublin (strain CT_0... [more]
XYLA_SALCH2.503e-3854.14Xylose isomerase OS=Salmonella choleraesuis GN=xyl... [more]
XYLA_SALA42.503e-3854.14Xylose isomerase OS=Salmonella agona (strain SL483... [more]
XYLA_BACSK2.503e-3854.55Xylose isomerase OS=Bacillus clausii (strain KSM-K... [more]
XYLA_THENN3.269e-3857.89Xylose isomerase OS=Thermotoga neapolitana (strain... [more]
XYLA_THENE3.269e-3857.89Xylose isomerase OS=Thermotoga neapolitana GN=xylA... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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