CF832740

Overview
NameCF832740
Unique NameCF832740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_RUMFL (Xylose isomerase OS=Ruminococcus flavefaciens GN=xylA PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.269e-38
Identity = 77/133 (57.89%), Postives = 92/133 (69.17%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FLRKYGL  DFK+NIE NHATL+ H+  H++  AR NG+ G+IDAN GD  +GWDTDQF T+I + T+ M  VIK GG   GG NFDAK RR S   ED+F ++I GMD  A G R A KLIEDG
Sbjct:  242 FDTATVLGFLRKYGLDKDFKMNIEANHATLAQHTFQHELRVARDNGVFGSIDANQGDVLLGWDTDQFPTNIYDTTMCMYEVIKAGGFTNGGLNFDAKARRGSFTPEDIFYSYIAGMDAFALGFRAALKLIEDG 374          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ANATD (Xylose isomerase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=xylA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.269e-38
Identity = 76/133 (57.14%), Postives = 94/133 (70.68%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D+A    FL+KY L   FKLNIE NHATL+GH  HH++  AR+N +LG+IDAN GD  +GWDTDQF TD+   TL M  VIK GG   GG NFDAK+RR S ++EDL I HI GMD  A+G + A KL++DG
Sbjct:  244 FDSAHVYGFLKKYDLDKYFKLNIEVNHATLAGHDFHHELRFARINNMLGSIDANMGDLLLGWDTDQFPTDVRLTTLAMYEVIKAGGFDKGGLNFDAKVRRGSFELEDLVIGHIAGMDAFAKGFKIAYKLVKDG 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_MARMS (Xylose isomerase OS=Marinomonas sp. (strain MWYL1) GN=xylA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.269e-38
Identity = 73/132 (55.30%), Postives = 95/132 (71.97%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+++GL  + K+NIE NHATL+GHS HH+I TA   G+LG++DAN GD Q+GWDTDQF T + E TL+   ++K+GG   GG+ FD KLRR+S D+EDLF  HI  MDT+A  L  A K+IED
Sbjct:  245 YDTATVYGFLKEFGLEKEIKVNIEANHATLAGHSFHHEIATACSLGILGSVDANQGDAQLGWDTDQFPTSVEEYTLVTYEILKSGGFKTGGYMFDTKLRRQSMDLEDLFHGHIGAMDTLALSLERAVKMIED 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THEP1 (Xylose isomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=xylA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.575e-38
Identity = 78/132 (59.09%), Postives = 94/132 (71.21%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D ATA  FL+ +GL   FK NIE NHATL+GH+  H++  AR+ G LG+IDAN GD  +GWDTDQF T+I + TL M  VIK GG   GG NFDAK+RR S  VEDLFI HIVGMDT A G + A KL++D
Sbjct:  245 FDVATAYAFLKNHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGDLLLGWDTDQFPTNIYDTTLAMYEVIKAGGFTKGGLNFDAKVRRASYKVEDLFIGHIVGMDTFALGFKIAYKLVKD 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_PHOLL (Xylose isomerase OS=Photorhabdus luminescens subsp. laumondii GN=xylA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.282e-38
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D AT   FL+++GL N+ K+NIE NHATL+GHS  H++ TA   G+LG+IDAN GD Q+GWDTDQF   + E +L+M  ++K GG   GG NFDAK+RR+S D++DLF  HI  +DT+A  L++A K++ DG
Sbjct:  245 YDVATVYGFLKQFGLENEIKVNIEANHATLAGHSFQHEVATAIALGILGSIDANRGDAQLGWDTDQFPNSVEENSLVMYEILKAGGFTTGGLNFDAKVRRQSIDIDDLFYGHIGAIDTMALSLKSAVKILVDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THETU (Xylose isomerase OS=Thermoanaerobacter thermosulfurogenes GN=xylA PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.510e-38
Identity = 76/132 (57.58%), Postives = 92/132 (69.70%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D A    FLRKY L   FK+NIE NHATL+ H   H++  AR+NG+LG+IDANTGD  +GWDTDQF TDI   TL M  VIK GG   GG NFDAK+RR S + EDLF+ HI GMD  A+G + A KL++D
Sbjct:  245 FDVANVLAFLRKYDLDKYFKVNIEANHATLAFHDFQHELRYARINGVLGSIDANTGDMLLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKD 376          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THESQ (Xylose isomerase OS=Thermotoga sp. (strain RQ2) GN=xylA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.510e-38
Identity = 78/133 (58.65%), Postives = 93/133 (69.92%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D ATA  FL+ +GL   FK NIE NHATL+GH+  H++  AR+ G LG+IDAN GD  +GWDTDQF T+I + TL M  VIK GG   GG NFDAK+RR S  VEDLFI HI GMDT A G + A KL +DG
Sbjct:  245 FDVATAYAFLKNHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGDLLLGWDTDQFPTNIYDTTLAMYEVIKAGGFTKGGLNFDAKVRRASYKVEDLFIGHIAGMDTFALGFKIAYKLAKDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_THEMA (Xylose isomerase OS=Thermotoga maritima GN=xylA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.510e-38
Identity = 78/133 (58.65%), Postives = 93/133 (69.92%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D ATA  FL+ +GL   FK NIE NHATL+GH+  H++  AR+ G LG+IDAN GD  +GWDTDQF T+I + TL M  VIK GG   GG NFDAK+RR S  VEDLFI HI GMDT A G + A KL +DG
Sbjct:  245 FDVATAYAFLKNHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGDLLLGWDTDQFPTNIYDTTLAMYEVIKAGGFTKGGLNFDAKVRRASYKVEDLFIGHIAGMDTFALGFKIAYKLAKDG 377          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_NOVAD (Xylose isomerase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=xylA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.242e-37
Identity = 75/133 (56.39%), Postives = 94/133 (70.68%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDG 400
            +D  T   FL+++GL ++ K+NIE NHATLSGH+  H++  AR  G+LG+IDAN GD Q GWDTDQF   + E TL ML +I+ GG   GGFNFDAK+RR+S D  DLF  HI G+DT+A  L  AA LIEDG
Sbjct:  246 FDTQTVFGFLKRFGLESEVKVNIEANHATLSGHTFEHELAMARALGILGSIDANRGDHQNGWDTDQFPNSVEELTLAMLELIRAGGFTDGGFNFDAKVRRQSIDAADLFHGHIGGIDTIAHALVKAAALIEDG 378          
BLAST of CF832740 vs. ExPASy Swiss-Prot
Match: XYLA_ACTPJ (Xylose isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=xylA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.622e-37
Identity = 72/132 (54.55%), Postives = 94/132 (71.21%), Query Frame = 2
Query:    2 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIED 397
            +D AT   FL+++GL  + K+NIE NHATL+GH+  H+I TA    + G+IDAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GGFNFDAK+RR+STD  DLF  HI  +D +A  L+ AAK+IED
Sbjct:  245 YDVATVYGFLKQFGLEKEIKVNIEANHATLAGHTFQHEIATAAALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTGGFNFDAKIRRQSTDPYDLFHGHIGAIDVLALSLKRAAKMIED 376          
The following BLAST results are available for this feature:
BLAST of CF832740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
XYLA_RUMFL3.269e-3857.89Xylose isomerase OS=Ruminococcus flavefaciens GN=x... [more]
XYLA_ANATD3.269e-3857.14Xylose isomerase OS=Anaerocellum thermophilum (str... [more]
XYLA_MARMS4.269e-3855.30Xylose isomerase OS=Marinomonas sp. (strain MWYL1)... [more]
XYLA_THEP15.575e-3859.09Xylose isomerase OS=Thermotoga petrophila (strain ... [more]
XYLA_PHOLL7.282e-3852.63Xylose isomerase OS=Photorhabdus luminescens subsp... [more]
XYLA_THETU9.510e-3857.58Xylose isomerase OS=Thermoanaerobacter thermosulfu... [more]
XYLA_THESQ9.510e-3858.65Xylose isomerase OS=Thermotoga sp. (strain RQ2) GN... [more]
XYLA_THEMA9.510e-3858.65Xylose isomerase OS=Thermotoga maritima GN=xylA PE... [more]
XYLA_NOVAD1.242e-3756.39Xylose isomerase OS=Novosphingobium aromaticivoran... [more]
XYLA_ACTPJ1.622e-3754.55Xylose isomerase OS=Actinobacillus pleuropneumonia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832740 ID=CF832740; Name=CF832740; organism=Citrus sinensis; type=EST; length=405bp
CTGGGATGCAGCAACAGCAGCTAATTTCTTGCGGAAATATGGCCTCATAA
ATGACTTTAAACTAAACATTGAGTGTAACCATGCCACCCTATCTGGTCAC
AGCTGCCATCATGATATTGAAACTGCAAGACTCAATGGTCTGCTAGGAAA
CATCGATGCAAACACTGGTGACCCTCAAGTTGGTTGGGATACAGATCAAT
TCCTGACAGATATTGGAGAGGCTACTTTGATTATGCTCAGTGTGATTAAA
AATGGAGGTTTGGCACCTGGAGGATTCAACTTTGATGCAAAATTACGAAG
AGAGAGCACTGACGTTGAAGACTTGTTCATTGCTCATATTGTTGGAATGG
ATACCGTTGCTCGTGGACTTCGAACTGCTGCCAAGCTGATTGAGGATGGT
TCTCT
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