CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SALRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinibacter ruber (strain DSM 13855) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 51/148 (34.46%), Postives = 65/148 (43.92%), Query Frame = 2
Query:  206 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            GL  AV D   I GY    G                    L + GA  IGKT  DEFA   +    H+    NP AP  +P              L   +LG DT G VR P+AFCG +G +P+YG VS  G++  ++SLD +G   R
Sbjct:   70 GLVLAVKDNICIRGYPVSCGSK--MLADFSSLYDATVIDRLRDAGAIFIGKTNCDEFAMGSSNETSHFGPVRNPHAPEYVPGGSSGGSAAAVAAGLCHAALGSDTGGSVRQPAAFCGTVGLKPTYGRVSRSGLVAFASSLDVIGPLTR 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_LEGPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.144e-15
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  332 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            + GA  IGKT +DEFA   +  N ++ +  NP    ++              +LV F++G DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G FA+  + L  + H +
Sbjct:  109 QNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVSGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCM 226          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ANADE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 58/174 (33.33%), Postives = 76/174 (43.68%), Query Frame = 2
Query:  206 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 727
            G+  AV DLF  +G  T  G                    L   GA  +GK  +DEFA   +  N  Y    NP   S+ P               V  SLG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD VG  AR+      VG   L L   A   PR +
Sbjct:   78 GVPVAVKDLFVTKGVPTTAGSR--ILEGYLPPYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLARE------VGDAALVLRTIAGHDPRDM 243          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ANAD2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.800e-15
Identity = 58/174 (33.33%), Postives = 76/174 (43.68%), Query Frame = 2
Query:  206 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 727
            G+  AV DLF  +G  T  G                    L   GA  +GK  +DEFA   +  N  Y    NP   S+ P               V  SLG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD VG  AR+      VG   L L   A   PR +
Sbjct:   78 GVPVAVKDLFVTKGVPTTAGSR--ILEGWLPPYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLARE------VGDAALVLRTIAGHDPRDM 243          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_DEHSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L + GA  +GKT +DEFA   +  N  Y T  NP    ++P                 FSLG DT G +R P++FC + G++PSYG VS  G++  ++SLD +G F +D
Sbjct:  111 LAKEGAVLLGKTNMDEFAMGSSTENSAYFTTRNPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKD 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_DEHSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.657e-15
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L + GA  +GKT +DEFA   +  N  Y T  NP    ++P                 FSLG DT G +R P++FC + G++PSYG VS  G++  ++SLD +G F +D
Sbjct:  111 LAKEGAVLLGKTNMDEFAMGSSTENSAYFTTRNPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKD 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ANASK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter sp. (strain K) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.777e-15
Identity = 57/174 (32.76%), Postives = 76/174 (43.68%), Query Frame = 2
Query:  206 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 727
            G+  AV D+F  +G  T  G                    L   GA  +GK  +DEFA   +  N  Y    NP   S+ P               V  SLG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD VG  AR+      VG   L L   A   PR +
Sbjct:   78 GVPVAVKDIFVTKGVPTTAGSR--ILEGYLPPYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLARE------VGDAALVLRTIAGHDPRDM 243          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METM7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            GA  +G T +DEFA   +G   ++    NPAA  ++P             DL D ++G DT G +R P++ CGI+GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 GALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METM6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            GA  +G T +DEFA   +G   ++    NPAA  ++P             DL D ++G DT G +R P++ CGI+GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 GALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_LYSSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lysinibacillus sphaericus (strain C3-41) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L E G   +GK  +DEFA   +  N +Y T  NP   + +P               V FSLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+
Sbjct:  109 LREAGMITVGKLNMDEFAMGSSNENSYYKTTKNPWNLNHVPGGSSGASAASVAAGEVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRN 217          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_SALRD2.144e-1534.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_LEGPH2.144e-1535.59Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_ANADE2.800e-1533.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANAD22.800e-1533.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_DEHSC3.657e-1537.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DEHSB3.657e-1537.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_ANASK4.777e-1532.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METM76.239e-1538.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METM66.239e-1538.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LYSSC6.239e-1536.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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