CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STAA2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain JH1) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 38/106 (35.85%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  341 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            A  IGK  +DEFA   +    ++    NP     +P              LV FSLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_PARUW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Protochlamydia amoebophila (strain UWE25) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 40/104 (38.46%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            L+  GA  IGKT +DEFA   +  N      +NP      P              L   SLG DT G VR+P++FCG++GF+P+YG VS  G++   +SLD +G
Sbjct:  109 LLAEGAVIIGKTNMDEFAMGSSTENSALQKTSNPWNLKCTPGGSSGGSAAAVAGRLSPLSLGSDTGGSVRLPASFCGVVGFKPTYGRVSRFGLVAYGSSLDQIG 212          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_GLOVI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Gloeobacter violaceus GN=gatA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK----ILRHV-GHVLLQLPFAAQRSP--RQIIIAD 739
            L E GA  IGKT +DEFA   +  N  +    NP    ++P                  SLG DT G +R P++FCG++G +P+YG VS  G+I  ++SLD +G F R  +    +L+ + GH  L     A   P  RQ +I+D
Sbjct:  107 LEEQGALIIGKTNLDEFAMGSSTENSAFGPTRNPWDLGRVPGGSSGGSAAAVAACEAVASLGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLIAFASSLDQIGPFTRTVEDAALVLQAIAGHDPLDSTSLAVNVPDYRQALISD 251          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_DESRM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfotomaculum reducens (strain MI-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            +GKT +DEFA   +  N  +    NP    ++P                  SLG DT G +R P+A CG++G +P+YG+VS  G++  ++SLD +G F RD   + HV +V+
Sbjct:  119 VGKTNMDEFAMGSSTENSGFHLTHNPWDLDRVPGGSSGGSAAAVAAGEAIISLGSDTGGSIRQPAALCGVVGMKPTYGSVSRYGLVAYASSLDQIGPFTRDVTDMAHVLNVI 230          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CYAP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            L   GA  +GKT +DEFA   +  N  Y    NP    ++P                  +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G FA
Sbjct:  107 LAAAGAVMVGKTNLDEFAMGSSTENSAYQLTANPWDLQRVPGGSSGGSAAAVAAGETLIALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFA 213          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STAES (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            L +  A  IGK  +DEFA   +    ++    NP   + +P              LV FSLG DT G +R P+++CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  111 LHDENAVLIGKLNMDEFAMGGSTETSYFKKTLNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPASYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STAEQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            L +  A  IGK  +DEFA   +    ++    NP   + +P              LV FSLG DT G +R P+++CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  111 LHDENAVLIGKLNMDEFAMGGSTETSYFKKTLNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPASYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_NEOSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neorickettsia sennetsu (strain Miyayama) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ----MPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L++ GA  +GK  +DEFA   + T+  +    NP    +    +P                 FSLG DT G VR P++FCG++G RP+YG  S  G+IP++ SLD  G  +R+
Sbjct:  112 LIDAGAVMLGKANMDEFAMGSSNTSSFFGPVKNPLKGKKGVDLVPGGSSGGSAAAVADYYSPFSLGSDTGGSVRQPASFCGLVGLRPTYGRCSRWGMIPLANSLDQAGILSRN 224          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_MOOTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moorella thermoacetica (strain ATCC 39073) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 38/109 (34.86%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L E GA  +GK  +DEFA   +  N  +    NP    ++P                 F+LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G   RD
Sbjct:  111 LKEAGAVMLGKLNMDEFAMGSSTENSSFFPTRNPWDLERVPGGSSGGAVAAVAAGEAYFALGSDTGGSIRQPASFCGVVGMKPTYGRVSRYGLVAFASSLDQIGPITRD 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_BACST (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus stearothermophilus GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            GA  IGK  +DEFA   +  N  +    NP    ++P               V F+LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  115 GAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLKRVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITR 218          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_STAA22.621e-1335.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PARUW2.621e-1338.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_GLOVI2.621e-1335.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_DESRM2.621e-1334.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CYAP43.423e-1335.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_STAES4.471e-1334.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAEQ4.471e-1334.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_NEOSM4.471e-1335.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_MOOTA4.471e-1334.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_BACST4.471e-1336.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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