CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ALKMQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkaliphilus metalliredigens (strain QYMF) GN=gatA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.471e-13
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            GA  IGKT +DEFA   +  N  +    NP   +++P                  ++G DT G +R P+AFCG +G +P+YG VS  G+I  ++SLD +G F +  K
Sbjct:  115 GAIIIGKTNMDEFAMGSSTENSAFKVTKNPWDLTKVPGGSSGGSAAALAAGFAPLTIGSDTGGSIRQPAAFCGTVGLKPTYGLVSRFGLIAFASSLDQIGPFTKTVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_PROM4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9211) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF 643
            L E GA  +GKT +DEFA   +     +   +NP   S++P              L   +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD VG F
Sbjct:  106 LWEAGAILLGKTNLDEFAMGSSTETSAFGATSNPWDLSRVPGGSSGGSAAAVASGLCLAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPF 211          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CYAP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 8801) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E GA  +GKT +DEFA   +  N  Y    NP    ++P             +    +LG DT G +R P++ CG++G +P+YG VS  G++   +SLD +G F R
Sbjct:  107 LQEIGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLERVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYGSSLDQIGPFGR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CLOBB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            G   +GK  +DEFA   +  N  Y    NP    ++P               V  +LG DT G VR P++FCGI+G +P+YG VS  G++   ++LD VG   RD K
Sbjct:  115 GGVILGKLNMDEFAMGSSTENSAYKITRNPWDLDRVPGGSSGGSAAAVASKEVPLALGTDTGGSVRQPASFCGIVGLKPTYGRVSRSGVVAYGSTLDQVGTLGRDVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CLOBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            G   +GK  +DEFA   +  N  Y    NP    ++P               V  +LG DT G VR P++FCGI+G +P+YG VS  G++   ++LD VG   RD K
Sbjct:  115 GGVILGKLNMDEFAMGSSTENSAYKITRNPWDLDRVPGGSSGGSAAAVASKEVPLALGTDTGGSVRQPASFCGIVGLKPTYGRVSRSGVVAYGSTLDQVGTLGRDVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter sp. (strain ADP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            G   +GK  +DEFA      + ++    NP A  ++P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  G+I  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKLNMDEFAMGSTSESSYFGATCNPWALDRVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGMIAYASSLDQGGPMARSAEDCAYLMNVM 230          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_PROM9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9312) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 35/104 (33.65%), Postives = 56/104 (53.85%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            L   G  C+GKT +DEFA   +     +   +NP   S++P              L   ++G DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G
Sbjct:  106 LWSSGGICLGKTNLDEFAMGSSTETSVFGVTSNPWDISRVPGGSSGGSAASVAAGLCSAAIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIG 209          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_HALSA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Halobacterium salinarium GN=gatA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            L+  G T +GKT +DEF         ++    NP   +++P                D +LG DT G VR P+A+CG++G +P+YG VS  G++  + SL+ +G
Sbjct:   60 LLAAGGTIVGKTNMDEFGMGTTTETSYFGPTKNPVDETRVPGGSSGGSAAAVANGDADLALGSDTGGSVRAPAAYCGVVGLKPTYGLVSRYGLVAYANSLEQIG 163          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ANOFW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E  A  +GK  +DEFA   +  N  +    NP    ++P               V F+LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  111 LNEADAVTVGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITR 218          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_TREDE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema denticola GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+E GA  +G+  +DE A   +     Y    NP   ++ P             +   FSLG +T G VR+P+++CGI G +P+YG  S  G++  S+SLD VG F ++
Sbjct:  114 LLEAGAVLMGRINMDELAMGSSTEFSCYGPSRNPVDRARTPGGSSGGSAAVVAGNQAPFSLGTETGGSVRLPASYCGIYGLKPTYGLFSRYGVVAFSSSLDQVGLFGKE 222          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_ALKMQ4.471e-1335.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_PROM45.839e-1336.79Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CYAP85.839e-1335.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBB5.839e-1336.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBA5.839e-1336.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ACIAD5.839e-1332.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_PROM97.626e-1333.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_HALSA7.626e-1332.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_ANOFW7.626e-1335.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_TREDE9.960e-1333.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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