CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRTD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            IGKT +DEFA   +G   +Y    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G F++  K
Sbjct:  117 IGKTNMDEFAMGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVK 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRT2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            IGKT +DEFA   +G   +Y    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G F++  K
Sbjct:  117 IGKTNMDEFAMGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVK 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRT1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain CNRZ 1066) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            IGKT +DEFA   +G   +Y    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G F++  K
Sbjct:  117 IGKTNMDEFAMGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVK 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_PROMP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            G  C+GKT +DEFA   +     + T +NP   +++P              L   ++G DT G +R P++FCG++G +P+YG VS  G+I  ++SLD +G
Sbjct:  110 GGICLGKTNLDEFAMGSSTETSVFGTTSNPWDVNRVPGGSSGGSAASVAAGLCLAAIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLIAFASSLDQIG 209          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_NITOC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 48/149 (32.21%), Postives = 64/149 (42.95%), Query Frame = 2
Query:  203 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            TG+  A  D+F   G  T  G                    L   GA  +GKT +DEFA   +     Y +  NP A  ++P              L   + G DT G +R P+A CGI G +P+YG VS  G+I  ++SLD  G  AR
Sbjct:   69 TGIPLAHKDIFCTTGVKTSCGSK--MLDNFTAPYNATVVSRLKTAGAVMLGKTNMDEFAMGSSNETSFYGSVKNPWAHDRVPGGSSGGSAAAVAARLTPAATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQGGPMAR 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_LEPIN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leptospira interrogans GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+E G     +T +DEFA   +  N  + T  NP    ++P              +V  +LG DT G VR P++ CG+ G +P+YG VS  G++  ++SLD +G F+R+
Sbjct:  112 LLEKGFILFPRTNMDEFAMGSSTENSAFQTTRNPFDLERIPGGSSGGSAAAVAASMVPLALGSDTGGSVRQPASLCGLYGLKPTYGTVSRYGLVAYASSLDQIGPFSRE 220          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_LEPIC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+E G     +T +DEFA   +  N  + T  NP    ++P              +V  +LG DT G VR P++ CG+ G +P+YG VS  G++  ++SLD +G F+R+
Sbjct:  112 LLEKGFILFPRTNMDEFAMGSSTENSAFQTTRNPFDLERIPGGSSGGSAAAVAASMVPLALGSDTGGSVRQPASLCGLYGLKPTYGTVSRYGLVAYASSLDQIGPFSRE 220          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_DESAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E GA  +GKT +DEFA   +  N  + T  NP   ++ P             D+   + G DT G +R P + C ++G +P+YG VS  G++  ++SLD +G FA+
Sbjct:  110 LKEAGAVLVGKTNMDEFAMGSSTENSAFKTTKNPWDLTRTPGGSSGGSAAAVAADMCLGAFGSDTGGSIRQPGSHCSVVGLKPTYGRVSRYGLVAFASSLDQIGPFAK 217          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CLOPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L + GA  +GKT +DEFA        ++    NP     +P             +    +LG DT G +R PSAFCG+ G +P+YG VS  G++  ++SLD +G  AR
Sbjct:  112 LKDAGAIILGKTNMDEFAMGSTTETSYFGATKNPWNIECIPGGSSGGSAAAVAAEEAFIALGTDTGGSIRQPSAFCGVTGIKPTYGTVSRYGLVAYASSLDQIGPIAR 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_BACSU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus subtilis GN=gatA PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L +  A  IGK  +DEFA   +  N  Y    NP     +P               V FSLG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  111 LQDAEAVTIGKLNMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITR 218          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_STRTD9.960e-1338.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRT29.960e-1338.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRT19.960e-1338.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROMP9.960e-1335.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NITOC9.960e-1332.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_LEPIN9.960e-1333.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEPIC9.960e-1333.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_DESAA9.960e-1334.26Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CLOPH9.960e-1335.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BACSU9.960e-1336.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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