CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_BACSK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus clausii (strain KSM-K16) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            IGK  +DEFA   +  N  +   TNP     +P               V F+LG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  117 IGKINMDEFAMGSSNENSAFQVTTNPWNTDYVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITR 216          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA1_CLOAB (Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum GN=gatA1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 37/109 (33.94%), Postives = 56/109 (51.38%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L +     IGK  +DEFA   +  N  +    NP +  ++P                  SLG +T G VR P++FCG++G +P+YG +S  G++   ++LD VG FARD
Sbjct:  111 LKKNNGVIIGKANMDEFAMGSSTENSAFKVSKNPWSLERVPGGSSGGSAVAVASLEAPISLGTETGGSVRQPASFCGLVGLKPTYGRISRYGVVAFGSTLDQVGMFARD 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STAAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain N315) GN=gatA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  341 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            A  IGK  +DEFA   +    ++    NP     +P              LV  SLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STAAM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gatA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  341 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            A  IGK  +DEFA   +    ++    NP     +P              LV  SLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STAA1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 2
Query:  341 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            A  IGK  +DEFA   +    ++    NP     +P              LV  SLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_RALSO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia solanacearum GN=gatA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L   G   +GKT +DEFA   +  N H+    NP   +++P             DL   + G DT G +R P++F GI G +P+YG VS  G+I  ++SLD  G  AR
Sbjct:  107 LAAAGMVTLGKTNMDEFAMGSSNENSHFGPVKNPWDVARVPGGSSGGSAAAVAADLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_OCEIH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Oceanobacillus iheyensis GN=gatA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            +GK  +DEFA   +  N  Y+   NP     +P               V F+LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G
Sbjct:  117 VGKLNMDEFAMGSSNENSGYEPTRNPWNTEHVPGGSSGGSAAAVAAGEVLFTLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLVAFASSLDQIG 212          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_MYCPN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma pneumoniae GN=gatA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--------DPKILRHVGHVLLQLPFAAQRSP 718
            L   GA  +GK  +DEF     G +  +    +P   + +P              +V FS+G DT   VR P++ C I+GF+P+YG +S  G+ P + SLD VG FAR          +I++H      +  F+AQ+SP
Sbjct:  100 LNNSGALLVGKANLDEFGLGGTGLHSGFGFVHHPWNETLIPGGSSSGSAYAVARGIVPFSIGTDTGDSVRRPASICNIVGFKPTYGLISRNGVYPYAPSLDHVGIFARYVYDVALVSDEIIKHD-----KADFSAQKSP 233          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_GEOKA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus kaustophilus GN=gatA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            G   IGK  +DEFA   +  N  +    NP    ++P               V F+LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  115 GTITIGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITR 218          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_EUBE2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 37/109 (33.94%), Postives = 54/109 (49.54%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L   GA  IGKT +DEFA         +    NP  P  +P             +    +LG DT G +R P+++CG++G +P+YG VS  G+I   +SLD +G   +D
Sbjct:  111 LQNAGAVIIGKTNMDEFAMGSTTETSAFGATKNPRNPEHVPGGSSGGSAAAVAANECFAALGSDTGGSIRQPASYCGVVGLKPTYGTVSRYGLIAYGSSLDQIGPLCKD 219          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_BACSK9.960e-1336.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA1_CLOAB9.960e-1333.94Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS... [more]
GATA_STAAN1.301e-1234.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAM1.301e-1234.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAA11.301e-1234.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RALSO1.301e-1236.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_OCEIH1.301e-1236.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=O... [more]
GATA_MYCPN1.301e-1232.37Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_GEOKA1.301e-1235.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_EUBE21.301e-1233.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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