CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CHLSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG---WFARDPKILRHV--GH 679
            LV  GA  +GK   DEFA   +  N  Y   TNP  P+++P               V  +LG DT G +R P+A CGI G +P+YG VS  G+I   +SLD +G   W   D  +L +V  GH
Sbjct:  112 LVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAWTVADLAVLLNVIAGH 234          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CHLAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG---WFARDPKILRHV--GH 679
            LV  GA  +GK   DEFA   +  N  Y   TNP  P+++P               V  +LG DT G +R P+A CGI G +P+YG VS  G+I   +SLD +G   W   D  +L +V  GH
Sbjct:  112 LVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAWTVADLAVLLNVIAGH 234          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacteria bacterium (strain Ellin345) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.239e-15
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            L   GA  +GKT  DEFA   +  N  Y    NP   S++P                  SLG DT G +R P++FCG++G  P+YG VS  G+I  ++SLD +G FA+D K
Sbjct:  111 LEAAGAVILGKTNCDEFAMGSSNENSAYGPVRNPRDKSRVPGGSSGGSAAVVAAGTAVTSLGSDTGGSIRQPASFCGVVGLMPTYGRVSRYGLIAFASSLDHIGPFAKDVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METST (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            +++     IG T +DEFA   +     Y    NP AP  +P             ++ D +LG DT G +R P++ CG++GF+P+YG VS  G++ ++ SLD +G FA D
Sbjct:  106 ILDEDGVIIGLTNMDEFAAGSSTETSMYGPTNNPKAPGHIPGGSSGGSAAAIAANMCDITLGSDTGGSIRNPASHCGVMGFKPTYGMVSRQGLLDLAMSLDQIGPFAND 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_DEHE1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L E GA  +GKT +DEFA   +  N  + T  NP   +++P                 FSLG DT G +R P++FC + G +PSYG VS  G++  ++SLD +G F +D
Sbjct:  111 LAEEGAVLLGKTNMDEFAMGSSTENSAFFTTHNPWNTAKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGLKPSYGMVSRYGLVAFASSLDQIGPFTKD 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_THEPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+E G   +GK+ +DEFA   +  N  + T  NP   S++P             D   F+LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G F +D
Sbjct:  110 LLEEGVIILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKD 218          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_THEP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+E G   +GK+ +DEFA   +  N  + T  NP   S++P             D   F+LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G F +D
Sbjct:  110 LLEEGVIILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKD 218          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METMP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis GN=gatA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            GA  +G T +DEFA   +G    Y    NPAA  ++P             DL D ++G DT G +R P++ CGI+GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 GALIVGMTNMDEFAGGSSGETSCYGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METVS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            GA  IG T +DEFA   +G   +Y    NP A  ++P             DL D +LG DT G +R P++ CG++GF+P+YG VS  G+  ++ S D +G
Sbjct:   91 GALIIGMTNMDEFASGSSGETSYYGPTKNPKALDRIPGGSSSGSAAAVSADLCDMALGSDTGGSIRNPASHCGVVGFKPTYGVVSRQGLCDLAMSFDQIG 190          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METM5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.390e-14
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            GA  +G T +DEFA   +G    Y    NPAA  ++P             DL D ++G DT G +R P++ CGI+GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 GALIVGMTNMDEFAGGSSGETSCYGPTKNPAALDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_CHLSY6.239e-1538.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAA6.239e-1538.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ACIBL6.239e-1538.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METST8.148e-1534.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DEHE18.148e-1537.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_THEPX1.064e-1435.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THEP31.064e-1435.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_METMP1.064e-1439.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METVS1.390e-1438.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METM51.390e-1439.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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