CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SYNR3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain RCC307) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L + GA  +GKT +DEFA   +     +   +NP  P ++P                D +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F+R
Sbjct:  106 LWKAGAVMVGKTNLDEFAMGSSTETSAFGMTSNPWDPGRVPGGSSGGSAACVAAGQCDVALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIGPFSR 213          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L++ GA  +GKT +DEFA   +    +Y    NP    ++P                 F+LG DT G VR P+AFCG++G +P+YGAVS  G++  + SL+ VG  A +
Sbjct:  102 LLDAGAVILGKTNLDEFAMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANN 210          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_EXISA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L + GA  IGK  +DEFA   +  N  +    NP  P+++P               V FSLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  108 LHDAGALTIGKLNMDEFAMGSSNENSAFKPVRNPWDPTRVPGGSSGGSAASVAAGQVLFSLGSDTGGSIRQPAAYCGVVGMKPTYGLVSRFGLVAFASSLDQIGPLTR 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: HYIN_PSESS (Indoleacetamide hydrolase OS=Pseudomonas syringae pv. savastanoi GN=iaaH PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 40/104 (38.46%), Postives = 53/104 (50.96%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            GA   GK  + E ++ +   N H+ T  NP AP                  +V  S+G DT G +R+P+AFCGI GFRP+ G  S  GIIP+S + D VG   R
Sbjct:  107 GAVVAGKNNMHELSFGVTSINPHWGTVGNPVAPGYCAGGSSGGSAAAVASGIVPLSVGTDTGGSIRIPAAFCGITGFRPTTGRWSTAGIIPVSHTKDCVGLLTR 210          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_THET8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gatA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 664
            GA  +GKT +DEF    +  +  +    NP  P ++P             DL   +LG DT G VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR  + L
Sbjct:  102 GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDL 210          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_THET2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 664
            GA  +GKT +DEF    +  +  +    NP  P ++P             DL   +LG DT G VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR  + L
Sbjct:  102 GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDL 210          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIC5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            L++ GA  +GK   DEFA   +  N  Y    NP A  ++P             ++   +LG DT G +R P++FCG++G  P+YG VS  G+I  ++SLD VG FA
Sbjct:  109 LIDAGAVLVGKLNCDEFAMGSSNENSAYGPVKNPRALDRVPGGSSGGSAAAVAANMAVATLGTDTGGSIRQPASFCGVVGVLPTYGRVSRYGLIAFASSLDRVGPFA 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACAM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acaryochloris marina (strain MBIC 11017) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L   GA  +GKT +DEFA   +  N  Y    NP   S++P             D    S+G DT G +R P+A CG++G +P+YG VS  G++  ++SLD +G F R
Sbjct:  107 LAAAGAVMVGKTNLDEFAMGSSTENSAYQVTGNPWDVSRVPGGSSGGSAAAVAADECVVSIGSDTGGSIRQPAALCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFGR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: HYIN_PSESY (Indoleacetamide hydrolase OS=Pseudomonas syringae pv. syringae GN=iaaH PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            GA   GK  + E ++ +   N H+    NP AP                  +V  S+G DT G +R+P+AFCGI GFRP+ G +S  GIIP+S + D VG   R
Sbjct:  107 GAVVAGKNNMHELSFGVTSINPHWGAVGNPVAPGYCAGGSSGGSAAAVASGIVPLSVGTDTGGSIRIPAAFCGITGFRPTTGRLSTAGIIPVSHTKDCVGLLTR 210          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_THETN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+  G   +GK+ +DEFA   +  N  + T  NP   S++P             D   F+LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G F +D
Sbjct:  110 LLNEGVVILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAVAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKD 218          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_SYNR31.815e-1435.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METAC1.815e-1436.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_EXISA1.815e-1437.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
HYIN_PSESS2.371e-1438.46Indoleacetamide hydrolase OS=Pseudomonas syringae ... [more]
GATA_THET82.371e-1437.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THET22.371e-1437.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_ACIC52.371e-1437.38Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACAM12.371e-1437.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
HYIN_PSESY3.096e-1437.50Indoleacetamide hydrolase OS=Pseudomonas syringae ... [more]
GATA_THETN3.096e-1434.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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