CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            +G T +DEFA   +     +    NPAAP ++P             ++ D +LG DT G +R P++ CG++GF+P+YGAVS  G++ +S SLD +G  + D
Sbjct:  114 LGITNMDEFAAGSSTETSCFGPTQNPAAPGRIPGGSSGGSAAAVAAEMCDIALGSDTGGSIRNPASHCGVVGFKPTYGAVSRQGLLDLSMSLDQIGPLSND 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ANAVT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L++ GA  +GKT +DEFA   +  N  Y    NP   S++P             +    +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F +
Sbjct:  107 LLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFGK 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ANASP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena sp. (strain PCC 7120) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L++ GA  +GKT +DEFA   +  N  Y    NP   S++P             +    +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F +
Sbjct:  107 LLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFGK 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SYNY3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechocystis sp. (strain PCC 6803) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L + GA  +GKT +DEFA   +  N  Y    NP   +++P             D    +LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G FAR
Sbjct:  107 LQKAGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLTRVPGGSSGGSAAAVAADECLIALGSDTGGSIRQPASLCGVVGMKPTYGLVSRFGLVAYASSLDQIGPFAR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STACT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus carnosus (strain TM300) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            L +  A  IGK  +DEFA   +    +Y    NP   + +P              LV FSLG DT G +R P+A+CGI+G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  111 LHDENAVLIGKLNMDEFAMGGSTETSYYKKTVNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGIVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_NOSP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            L + GA  +GKT +DEFA   +  N  Y    NP   S++P                  +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G FA
Sbjct:  107 LADAGAVMVGKTNLDEFAMGSSTENSAYQVTANPWNLSRVPGGSSGGSAAAVSSQECVVALGSDTGGSIRQPASFCGVVGMKPTYGLVSRYGLVAYASSLDQIGPFA 213          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanobacterium thermoautotrophicum GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            IG T +DEFA   +     +    NPAAP ++P              + D +LG DT G +R P++ CG++GF+P+YGAVS  G++ ++ S D +G  A D
Sbjct:  117 IGMTNMDEFAAGSSTETSFFGPTDNPAAPGRIPGGSSGGSAAAVAAGMCDLALGSDTGGSIRNPASHCGVMGFKPTYGAVSRQGLLDLAMSFDQIGPLAAD 217          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+  GA  +GKT +DEFA   +    H+    NP    ++P                 F+LG DT G VR P++FCG++G +P+YGAVS  G++  + SL+ VG  A +
Sbjct:  102 LLSAGAVILGKTNMDEFAMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPASFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANN 210          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CHRSD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 49/148 (33.11%), Postives = 67/148 (45.27%), Query Frame = 2
Query:  206 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            GL  A+ D+F  +G  T  G                    + + G   +GKT +DEFA   +  N  Y    NP   S +P              LV  +LG DT G +R P+AFCGI G +P+YG VS  G++  ++SLD  G  AR
Sbjct:   70 GLPLALKDIFCTQGVRTSCGSK--MLDSFVAPYDATVVEKIRQAGGVSLGKTNMDEFAMGSSNENSFYGPVKNPWDLSAVPGGSSGGSAAAVAAGLVPAALGTDTGGSIRQPAAFCGITGLKPTYGRVSRYGMVAYASSLDQGGPMAR 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CARHZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E GA   GKT +DEFA   +  N  +    NP    ++P                  +LG DT G +R P+AFCGI+G +P+YGAVS  G++  ++SLD +G FAR
Sbjct:  111 LKEAGAVFTGKTNLDEFAMGSSTENSRFFPTRNPWDLERVPGGSSGGSAASVAAGEAVVALGSDTGGSIRQPAAFCGIVGLKPTYGAVSRYGLVAFASSLDQIGPFAR 218          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_METS33.096e-1436.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_ANAVT3.096e-1435.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANASP3.096e-1435.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNY34.044e-1436.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STACT4.044e-1436.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_NOSP74.044e-1436.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_METTH4.044e-1436.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METMA4.044e-1435.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CHRSD4.044e-1433.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CARHZ4.044e-1438.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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