CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SYNP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E GA  +GKT +DEFA   +  N  Y    NP   +++P                  +LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G FAR
Sbjct:  107 LQEAGAIMVGKTNLDEFAMGSSTENSGYQVTGNPWDVTRVPGGSSGGSAAAVAAGEAPIALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFAR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_NATPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            L + GAT +GKT +DEF          +    NPAA  ++P                D +LG DT G VR P+AFCG++G +P+YG VS  G++  + SL+ +G
Sbjct:   60 LRDAGATIVGKTNMDEFGMGTTTETSAFGPTENPAAEGRVPGGSSGGSAAAVAAGDADLALGSDTGGSVRCPAAFCGVVGIKPTYGLVSRYGLVAYANSLEQIG 163          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CYAA5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain ATCC 51142) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L + GA  +GKT +DEFA   +  N  Y    NP   S++P                  +LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G FAR+
Sbjct:  107 LKDAGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLSRVPGGSSGGSAAAVAASECVVALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARN 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_AKKM8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.281e-14
Identity = 39/108 (36.11%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E G   +G+T +DEFA   +G N  Y    NP AP ++P                  +LG DT G +R P+  CGI+G +P+YG VS  G++  ++SLD +G   R
Sbjct:  103 LKEAGGIPLGRTNMDEFAMGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAIAALGSDTGGSIRQPAGHCGIVGLKPTYGRVSRYGLVAFASSLDQIGPMTR 210          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SYNJB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L   G   +GKT +DEFA   +  N  +    NP   +++P             D    +LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD VG F R
Sbjct:  107 LAAAGMVTVGKTNLDEFAMGSSTENSAFQRTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_SYNJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain JA-3-3Ab) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L   G   +GKT +DEFA   +  N  +    NP   +++P             D    +LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD VG F R
Sbjct:  107 LAAAGMVTVGKTNLDEFAMGSSTENSAFQRTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGR 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanocaldococcus jannaschii GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  332 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            E G   IG   +DEFA   +G   ++    NP A  ++P             DL D +LG DT G +R P++ CG++GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 ENGGLIIGIANMDEFACGSSGETSYFGPTKNPRAKDRIPGGSSSGSAAAVSADLCDMALGSDTGGSIRNPASHCGVVGFKPSYGVVSRYGLCDLAMSFDQIG 192          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_METBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcoides burtonii (strain DSM 6242) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            L E GA  IGKT +DEFA   +  +  Y    NP    ++P                  SLG DT G VR P+AFCG++G +P+YGAVS  G+I  + SL+ +G
Sbjct:  101 LKEAGAVIIGKTNMDEFAMGTSTESSCYGVTLNPWDHERVPGGSSGGSAAVVAAGEAPISLGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGLISYANSLEQIG 204          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_EXIS2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            L E GA  IGK  +DEFA   +  N  Y    NP     +P               V FSLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  108 LHEAGAITIGKLNMDEFAMGSSNENSAYKPVRNPWNTKHVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGLVSRYGLVAFASSLDQIGPLTR 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_EUBR3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.897e-14
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L + G   +GKT +DEFA         +    NP     +P             + V F+LG DT G +R PS+FCG+ G +P+YG VS  G+I   +SLD +G  A+D
Sbjct:  111 LEDAGCVIVGKTNMDEFAMGSTTETSAFGATKNPWNTEHVPGGSSGGSCAAVAAEEVPFALGSDTGGSIRQPSSFCGVTGIKPTYGTVSRYGLIAYGSSLDQIGPIAKD 219          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_SYNP25.281e-1436.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_NATPD5.281e-1436.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_CYAA55.281e-1435.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_AKKM85.281e-1436.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNJB6.897e-1436.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNJA6.897e-1436.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METJA6.897e-1436.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METBU6.897e-1439.42Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_EXIS26.897e-1437.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_EUBR36.897e-1435.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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