CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_TRIEI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Trichodesmium erythraeum (strain IMS101) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 2 
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            LV+ GA  +GKT +DEF    +  N  Y   TNP   +++P                  +LG DT G +R P++FCG++G +P+YG VS  G++  ++S+D +G  +R  K
Sbjct:  107 LVDAGAIILGKTNLDEFGMGSSTENSAYQVTTNPWDNTRVPGGSSGGSAAAVASAESVVALGSDTGGSIRQPASFCGVVGIKPTYGLVSRYGLVAYASSMDQIGPLSRTVK 217
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRZT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRZP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain P1031) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRZJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain JJA) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWNHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRR6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain CGSP14) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRPN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWNHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRPJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRPI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
[Close]
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain 70585) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_TRIEI2.007e-1334.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_STRZT2.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRZP2.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRZJ2.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRR62.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPS2.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPN2.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPJ2.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPI2.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP72.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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