CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STRP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 646
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_STAHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            L +  A  IGK  +DEFA   +    ++    NP   + +P              LV FSLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  111 LHDENAILIGKLNMDEFAMGGSTETSYFKQTVNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVK 221          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_PROMT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL2A) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+  GA  IGKT +DEFA   +     +    NP   +++P              L   SLG DT G +R P++FCG++G +P+YG VS  G+I  ++SLD VG FA +
Sbjct:  106 LLNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFANN 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_PROM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL1A) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 652
            L+  GA  IGKT +DEFA   +     +    NP   +++P              L   SLG DT G +R P++FCG++G +P+YG VS  G+I  ++SLD VG FA +
Sbjct:  106 LLNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFANN 214          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_MARAV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 50/153 (32.68%), Postives = 66/153 (43.14%), Query Frame = 2
Query:  203 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNP----AAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            TG+ FA  D+F   G  T  G                        GA C+GKT +DEFA   +  +  Y   TNP        ++P              LV  + G DT G +R P+A CGI G +P+YG VS  G+I  ++SLD  G  AR
Sbjct:   69 TGVPFAHKDIFCTSGIRTSCGSK--MLDNFVPPYDATVTANFKAAGAVCLGKTNMDEFAMGSSNESSFYGAVTNPWGLSGGDKRVPGGSSGGSAAAVAARLVPAATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQGGPMAR 219          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_MACCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Macrococcus caseolyticus (strain JCSC5402) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 37/103 (35.92%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  350 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            +GK  +DEFA   +  N  Y    NP     +P              LV FSLG DT G +R P+++CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  115 VGKLNMDEFAMGGSTENSFYKKTVNPFDHKAVPGGSSGGSAAAVAASLVPFSLGSDTGGSIRQPASYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVK 217          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_HALMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Haloarcula marismortui GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 637
            L + GAT  GKT +DEF          +    NPAA  ++P                D +LG DT G +R P+AFCG++G +P+YG VS  G+I  + SL+ +G
Sbjct:   61 LKDAGATIPGKTNMDEFGMGTTTETSAFGAVENPAAEGRVPGGSSGGSAAVVAAGDADLALGSDTGGSIRCPAAFCGVVGIKPTYGLVSRYGLIAYANSLEQIG 164          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_GEOTN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 649
            GA  IGK  +DEFA   +  N  +    NP    ++P               V FSLG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  115 GAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITR 218          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_CHLAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 45/123 (36.59%), Postives = 60/123 (48.78%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG---WFARDPKILRHV--GH 679
            L+  G   IGK   DEFA   +  N  Y   TNP   S++P               V  +LG DT G +R P+A CGI G +P+YG VS  G+I   +SLD +G   W   D  ++ +V  GH
Sbjct:  112 LLAAGTVLIGKLNCDEFAMGSSTENSAYQITTNPWDTSRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAWTVADLALIMNVIAGH 234          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_STRP42.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP22.007e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAHJ2.007e-1335.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROMT2.007e-1337.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM12.007e-1337.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_MARAV2.007e-1332.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MACCJ2.007e-1335.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_HALMA2.007e-1336.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_GEOTN2.007e-1337.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_CHLAD2.007e-1336.59Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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