CF832911

Overview
NameCF832911
Unique NameCF832911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_BRAHW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            L++ GA  IG+T +DEFA        +Y    NP   + +P             +    +LG DT G +R P++FCGI+G +P+YG V  +G I +++SLD VG   +D K
Sbjct:  113 LIDNGAIIIGRTNMDEFAMGGTTETSNYGVTRNPKNRAHVPGGSSGGSAAAVAANFAFGALGSDTGGSIRQPASFCGIVGVKPTYGRVPRLGCIAMASSLDQVGPLTKDVK 223          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_AZOSE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain EbN1) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 48/147 (32.65%), Postives = 66/147 (44.90%), Query Frame = 2
Query:  203 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF 643
            TG+  A  D+F  EG +T  G                    L   GA  +GKT +DEFA   +  N H+    NP   +++P              LV  + G DT G VR P+A  G+ G +P+YG VS  G+I  ++SLD  G F
Sbjct:   69 TGIPLAHKDVFCTEGVLTTCGSK--MLANFVSPYDAHVVSLLKTAGAVSLGKTNMDEFAMGSSNENSHFGPAKNPWDTTRIPGGSSGGSAAAVAARLVPIATGTDTGGSVRQPAALTGVTGIKPTYGVVSRYGMIAYASSLDQGGAF 213          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_AZOSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain BH72) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 48/147 (32.65%), Postives = 67/147 (45.58%), Query Frame = 2
Query:  203 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF 643
            TG+  A  DLF  EG +T  G                    L + GA  +GKT +DEFA   +  + HY    NP   +++P              LV  + G DT G VR P++  G+ G +P+YG VS  G+I  ++SLD  G F
Sbjct:   69 TGIPLAHKDLFCTEGVLTTCGSK--MLADFVSPYDAHVVSRLKDAGAVSLGKTNMDEFAMGSSNESSHYGAVRNPWDTTRIPGGSSGGSAAAVAARLVPLATGSDTGGSVRQPASHTGVTGIKPTYGVVSRYGMIAYASSLDQGGAF 213          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIBY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AYE) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIBT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gatA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIBS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain SDF) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIBC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ACICU) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIB5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AB0057) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_ACIB3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AB307-0294) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  338 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 685
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of CF832911 vs. ExPASy Swiss-Prot
Match: GATA_UNCTG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gatA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 38/111 (34.23%), Postives = 57/111 (51.35%), Query Frame = 2
Query:  326 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 658
            L E G   +G+T +DEFA   +     Y    NP     +P              +V F+LG DT G +R P+ FCGI+G++PSYG +S  G   +++S D +G F++  K
Sbjct:  112 LKEAGVIFVGRTNMDEFAMGGSTETSVYQKTANPWNIDYIPGGSSGGSAAAVSSGMVPFALGSDTGGSIRQPAGFCGIVGYKPSYGLISRYGACALASSFDQIGVFSKTVK 222          
The following BLAST results are available for this feature:
BLAST of CF832911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 335
Match NameE-valueIdentityDescription
GATA_BRAHW2.007e-1335.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_AZOSE2.007e-1332.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_AZOSB2.007e-1332.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBY2.007e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBT2.007e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBS2.007e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBC2.007e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIB52.007e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIB32.007e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_UNCTG2.621e-1334.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=U... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02K12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832911 ID=CF832911; Name=CF832911; organism=Citrus sinensis; type=EST; length=743bp
CAAATTAAGAATCATATCGAGTTCCTATATGGCTTCTCAATCTGCTAATT
TATGGGTATTGTTGGGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAA
AAGCTTAAGAAGAATATAAAACAAGATTTTGGAGCGTTCATCGAGAAACT
TCAACTGCTTCCTCCGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTC
TTACCGGCCTCTCTTTTGCCGTCTCTGACCTATTCGATATCGAAGGATAC
GTGACTGGTTTTGGGCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTC
TCGAACGTCTACTGTGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCA
TTGGCAAAACTGTGGTTGATGAATTTGCCTACAGTATAAATGGAACAAAT
AAGCATTATGATACGCCTACTAATCCTGCTGCACCTTCACAAATGCCGGG
TGGATCTTCTAGTGGGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATT
TCTCCTTGGGTATTGATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTT
TGTGGAATTTTAGGGTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGG
GATTATACCCATTTCAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGG
ATCCTAAAATTCTGCGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTT
GCAGCTCAACGTAGTCCAAGACAAATTATAATTGCTGATGATT
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