CF834233

Overview
NameCF834233
Unique NameCF834233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.323e-51
Identity = 99/192 (51.56%), Postives = 129/192 (67.19%), Query Frame = 3
Query:   45 IMPP*NIAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            + P     VG   +ATHPD +RAA++EF++T IFVFA EGS ++  K+ H+  +T                       NISGGHVNPAVTFGA VGG +SL+R +LYW+AQLLG+  A LLL+  T G     FAL+SGVG W+AV+ E VMTFGL+Y  YAT +DPK+G +GTIAP+A+GF++ AN+LAGG
Sbjct:    5 VRPGRRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGG 195          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.850e-51
Identity = 107/186 (57.53%), Postives = 128/186 (68.82%), Query Frame = 3
Query:   63 IAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            I VG   ++    +L+A L+EF++TL+FVFAG GS +AF KLT +GA  P+                     NISGGH+NPAVT G  +GGNI+L+ G  YWIAQ LGS VACLLL FVTNG++     +S+G+GA   VV EIV+TF LVYTVYATA DPKKGSLGTIAPIAIGFIV ANILA G
Sbjct:    4 IEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAG 189          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 6.567e-51
Identity = 100/188 (53.19%), Postives = 126/188 (67.02%), Query Frame = 3
Query:   72 GHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKL-----THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            G   EATHPD++RA LAEFLST +FVFAGEGS +A +KL      H G NTP                      N+SGGHVNPAVTF A +GG IS++R I YW+AQL+G+ +ACLLL+  TNG     F ++SGV   + ++ EI++TF LVY VY+TA+DPK+GS+G IAP+AIG IV ANIL GG
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAGEGSILALDKLYWDTAAHTGTNTPGGLVLVALAHALALFAAVSAAINVSGGHVNPAVTFAALIGGRISVIRAIYYWVAQLIGAILACLLLRLATNGLRPVGFHVASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGG 199          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 6.567e-51
Identity = 105/186 (56.45%), Postives = 128/186 (68.82%), Query Frame = 3
Query:   63 IAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            IA G   ++    +L+A +AEF++TL+FVFAG GS +A+NKLT + A  P+                     NISGGH+NPAVT G  VGGNI++L G  YWIAQLLGSTVACLLLK+VTNG       +++G+  +  VV EI++TF LVYTVYATA DPKKGSLGTIAPIAIGFIV ANILA G
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAG 189          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.463e-50
Identity = 98/190 (51.58%), Postives = 127/190 (66.84%), Query Frame = 3
Query:   51 PP*NIAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            P     VG   +ATHPD +RAA++EFL+T IFVFA EGS ++  KL +   +TP                      NISGGHVNPA+TFGA +GG +SL+R + YW+AQLLG+ VA LLL+  T G     FAL+SGVG W+AV+ E  MTFGL+Y  YAT +DPK+G +GTIAP+A+GF++ AN+LAGG
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKL-YQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGG 196          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.463e-50
Identity = 105/186 (56.45%), Postives = 127/186 (68.28%), Query Frame = 3
Query:   63 IAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            IA G   ++    +L+A +AEF++TL+FVFAG GS +A+NKLT + A  P+                     NISGGH+NPAVT G  VGGNI++L G  YWIAQLLGSTVACLLLK+VTNG       +++G+     VV EI++TF LVYTVYATA DPKKGSLGTIAPIAIGFIV ANILA G
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAG 189          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.560e-50
Identity = 103/186 (55.38%), Postives = 128/186 (68.82%), Query Frame = 3
Query:   63 IAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            IA G   ++    +++A +AEF++TL+FVFAG GS +A+NKLT + A  P+                     N+SGGH+NPAVT G  VGGNI++L G+ YWIAQ LGSTVACLLLKFVTNG +     +++G+ A   VV EI++TF LVYTVYATA DPKKGSLG IAPIAIGFIV ANILA G
Sbjct:    4 IAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAG 189          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 9.483e-50
Identity = 104/186 (55.91%), Postives = 127/186 (68.28%), Query Frame = 3
Query:   63 IAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            I +G   ++    +L+A L+EF++TL+FVFAG GS +AF KLT + A  P+                     NISGGH+NPAVT G  VGGNI+++ G  YWIAQ LGS VACLLL FVTNG++     +++G+GA   VV EIV+TF LVYTVYATA DPKKGSLGTIAPIAIGFIV ANILA G
Sbjct:    4 IEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAG 189          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.113e-49
Identity = 98/183 (53.55%), Postives = 124/183 (67.76%), Query Frame = 3
Query:   72 GHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            G   EATHPD++RA+LAEF ST IFVFAGEGSG+A  K+  + A +                       ++SGGHVNPAV+FGA +GG IS++R + YWIAQLLGS VA L+L+ VTN    S F +S GVG  +  + E+VMTFGL+YTVY TA+DPK+G++  IAP+AIG IV ANIL GG
Sbjct:    9 GRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGG 191          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.759e-49
Identity = 101/186 (54.30%), Postives = 128/186 (68.82%), Query Frame = 3
Query:   63 IAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            +A G   ++    +++A +AEF++TL+FVFAG GS +AF +LT+ GA  P+                     N SGGH+NPAVTFG  VGG+I++L G+ YW+AQLLG++VACLLL+FVT+G+      +S G      VVFEIV+TF LVYTVYATA DPKKGSLGTIAPIAIGFIV ANILA G
Sbjct:    4 LAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAG 189          
The following BLAST results are available for this feature:
BLAST of CF834233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
TIP31_MAIZE1.323e-5151.56Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP23_ARATH3.850e-5157.53Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP32_ARATH6.567e-5153.19Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP2_TOBAC6.567e-5156.45Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP31_ORYSJ1.463e-5051.58Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP1_TOBAC1.463e-5056.45Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP_ANTMA5.560e-5055.38Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP22_ARATH9.483e-5055.91Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIPA_PHAVU2.113e-4953.55Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP22_MAIZE2.759e-4954.30Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05C15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834233 ID=CF834233; Name=CF834233; organism=Citrus sinensis; type=EST; length=621bp
TAGTAATCACCCCCTTAAGGAGCANTCTTNATCGNTTGATCTCCATCATG
CCGCCTTAAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGA
TGCCCTAAGGGCAGCCCTAGCAGAGTTCCTCTCAACTCTAATATTTGTCT
TTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGC
GCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGC
CCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTA
ATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTA
CGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATG
CTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCACATCTGCTTTTGCTC
TCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATG
ACATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCAAAGAA
GGGAAGCTTGGGGACAATTGCACCAATTGCAATTGGTTTCATTGTAAGAG
CCAACATCTTGGCGGGCGGGG
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