CF834233

Overview
NameCF834233
Unique NameCF834233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.424e-29
Identity = 74/185 (40.00%), Postives = 99/185 (53.51%), Query Frame = 3
Query:   63 IAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAG 617
            + +GH  EA+ PD  R  L E + T +FVF G G+ M  +  T  G+                         +ISGGHVNPAVT    VGG+++L R  LY  AQ+L S+ AC LL+++T G  T   AL+ GVG    VV E V TF L++ +YAT LDP+K  L    P+  G +V AN +AG
Sbjct:    4 LTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK-LLPGAGPLLTGLLVGANSVAG 186          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.066e-29
Identity = 74/192 (38.54%), Postives = 99/192 (51.56%), Query Frame = 3
Query:   45 IMPP*NIAVGHPREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            ++P   + +GH  EA  P  LRA   E L T +FVF G  S +   K    GA   +                     ++SGGH+NPAVT    VGG+I+L R  LY  AQL GS++ACLLL+ +T G  T   AL+ GVG    V  E V TF L+  + AT LDP++ +     P+  G +V AN +AGG
Sbjct:    3 LLPMTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRRAAPPGTGPLLTGLLVGANTVAGG 193          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.877e-27
Identity = 71/182 (39.01%), Postives = 100/182 (54.95%), Query Frame = 3
Query:   84 EATHPDA--LRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            EA  PD   +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S++AC+LL++++ G  T   AL +G+     +V E+++TF L++  YA  LDP +  + TI P+  G IV AN LAGG
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRTIGPLLTGLIVGANSLAGG 196          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.637e-27
Identity = 69/180 (38.33%), Postives = 95/180 (52.78%), Query Frame = 3
Query:   84 EATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            E      +RA LAE + T +FVF G  + MA       GA  P +                     ++SGGH+NPAVT      G+I+  R  LY  AQLL S++AC+LL+++T G  T    L SG+G    +V EI++TF L++ VYAT LDP + S+    P+  G IV AN +AGG
Sbjct:   12 EVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDP-RSSVPGFGPLLTGLIVGANTIAGG 190          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.282e-26
Identity = 67/174 (38.51%), Postives = 93/174 (53.45%), Query Frame = 3
Query:   99 DALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            +ALR  ++EF+ST  FV A  GS M+  KL     + P                      N+SGGHVNPAVTF   V G IS+   + YW +Q++ S +ACL+LK     Q    + ++  +  + A V E V+ F LVYTV+ TA DP++G    + PI IGF+  AN+LA G
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRGLPLAVGPIFIGFVAGANVLAAG 192          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.287e-26
Identity = 67/173 (38.73%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  105 LRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S+ AC+LL+F++ G  T   AL  G+     +V E+++TF L++  YA  LDP +  +  I P+  G IV AN LAGG
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDP-RSQVRAIGPLLTGLIVGANSLAGG 194          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 4.012e-24
Identity = 65/183 (35.52%), Postives = 96/183 (52.46%), Query Frame = 3
Query:   96 PDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLG--------TIAPIAIGFIVRANILAGG 620
            P ALRA  AEF ST +FVF   GS ++   LT +  +  S                     ++SGGHVNPAVTF   +GG+I++   I YW +Q+LGST ACL+L +++ GQ      ++  +  + A + E V+TF +VYTV+  A DP+ G  G         +  + +G +  A +LA G
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH-VAGDPRGGGFGGRKGPAATALGALVVGAVTGACVLAAG 195          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.519e-18
Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 3
Query:  102 ALRAALAEFLSTLIFVFAGEGSGMAFNKLTH-NGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATA-LDPK-KGSLG-------TIAPIAIGFIVRANILAGG 620
            +LR+ LAEF+ST +FVF   GS ++   LT  +  ++                       ++SGGHVNPAVTF   +GG I +   + YW +QLLG+T ACL L   + G+      ++  +  +   V E V+TF LVYTV+     +P+ +G  G        +  +A+G    A +LA G
Sbjct:   18 SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAG 200          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIV 596
            RA +AEFL+T +FVF   GS + F     N                           +ISG H+NPAVT G  +   IS+ R ++Y IAQ +G+ VA  +L  +T+  T ++     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V
Sbjct:   12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSV 176          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 60/173 (34.68%), Postives = 83/173 (47.98%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAG 617
            RA  AEF +TL +VF G G+ + +       A  P                      +ISG HVNPAVTF   VG  +SLLR I Y +AQLLG+     +L  VT        AL++   GV    A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFG 175          
The following BLAST results are available for this feature:
BLAST of CF834233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
TIP43_MAIZE1.424e-2940.00Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ7.066e-2938.54Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE3.877e-2739.01Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ8.637e-2738.33Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH3.282e-2638.51Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP41_MAIZE4.287e-2638.73Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP51_ORYSJ4.012e-2435.52Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP51_MAIZE2.519e-1832.79Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
AQP1_HUMAN8.103e-1734.34Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
MIP_SHEEP1.382e-1634.68Lens fiber major intrinsic protein OS=Ovis aries G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05C15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834233 ID=CF834233; Name=CF834233; organism=Citrus sinensis; type=EST; length=621bp
TAGTAATCACCCCCTTAAGGAGCANTCTTNATCGNTTGATCTCCATCATG
CCGCCTTAAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGA
TGCCCTAAGGGCAGCCCTAGCAGAGTTCCTCTCAACTCTAATATTTGTCT
TTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGC
GCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGC
CCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTA
ATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTA
CGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATG
CTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCACATCTGCTTTTGCTC
TCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATG
ACATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCAAAGAA
GGGAAGCTTGGGGACAATTGCACCAATTGCAATTGGTTTCATTGTAAGAG
CCAACATCTTGGCGGGCGGGG
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