CF834233

Overview
NameCF834233
Unique NameCF834233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 58/177 (32.77%), Postives = 87/177 (49.15%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++TL+F++    + + +   T   A+ P                             ISGGH+NPAVTFG F+   +SL+R +LY  AQ LG+     L+K   +G        A  +S+G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   41 RAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 216          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 61/187 (32.62%), Postives = 91/187 (48.66%), Query Frame = 3
Query:   84 EATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            E T     RA +AEF++TL+F++    + + +   T   A+ P                             +SGGH+NPAVTFG F+   +SL+R +LY +AQ LG+     L+K      +V  G    A  LS+G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   29 ELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKGFQSAFYVRYG--GGANELSAGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 61/187 (32.62%), Postives = 90/187 (48.13%), Query Frame = 3
Query:   84 EATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            E T     RA +AEF++TL+F++    + + +   +  GAN                               +SGGH+NPAVTFG F+   +SL+R +LY +AQ LG+     L+K      +V  G    A  LS G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   34 ELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYG--GGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 56/170 (32.94%), Postives = 83/170 (48.82%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTP----SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAF---ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIV 596
            RA +AEFL+ ++FVF   G+ + FN      AN                            ++SG H+NPAVT G  +   IS+L+ ++Y IAQ LG+ VA  +L  +T+G   ++     LS GV A   +  EI++TF LV  V A   D ++  +    P+AIG  V
Sbjct:   12 RAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVT-DRRRHDVSGSVPLAIGLSV 180          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 56/166 (33.73%), Postives = 79/166 (47.59%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN---GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIV 596
            RA +AEFL+  +FVF   GS + F     N                           +ISG H+NPAVT G  +   IS+ R ++Y IAQ +G+ VA  +L  +T+   G +     L+ GV +   +  EI+ T  LV  V AT  D ++  LG  AP+AIG  V
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSAPLAIGLSV 176          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGAN----TPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++TL+F++    + + +   T    N    T                        ISGGH+NPAVTFG  +   ++L+R ++Y +AQ LG+     L+K   +   T     A  LS G      V  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   38 RALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAV 211          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 57/168 (33.93%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX--NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAF---ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIV 596
            RA +AEFL+ ++F+F   GS + F+    +   T +                       +ISG H+NPAVT G  +   IS+LR I+Y IAQ +G+ VA  +L  +T+    ++    AL+ GV +   +  EI+ T  LV  V AT  D ++  LG   P+AIGF V
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT-DRRRRDLGGSGPLAIGFSV 178          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RAA+AEF++TL+F++    + + + K T   A+                         ISGGH+NPAVTFG F+   +SLLR ++Y IAQ  G+     L+K    G        A +++ G     A   E++ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   40 RAAIAEFIATLLFLYITVATVIGYKKETDPCASV--GLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAV 207          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 60/173 (34.68%), Postives = 81/173 (46.82%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS---SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAG 617
            RA  AEF +TL +VF G G+ + +       A  P               X      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL+   +GV    A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFG 175          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.996e-15
Identity = 59/173 (34.10%), Postives = 80/173 (46.24%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALS---SGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAG 617
            RA  AEF +TL +VF G GS + +       A  P                      +ISG HVNPAVTF   VG  +SLLR   Y  AQLLG+     +L  VT        AL+   +GV    A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFG 173          
The following BLAST results are available for this feature:
BLAST of CF834233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
PIP26_MAIZE6.860e-1632.77Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_MAIZE8.959e-1632.62Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP23_ORYSJ8.959e-1632.62Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
AQPA_RANES8.959e-1632.94Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP1_PONAB8.959e-1633.73Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
PIP25_ARATH1.170e-1532.57Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
AQP1_BOVIN1.170e-1533.93Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
PIP1_ATRCA1.528e-1533.92Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
MIP_CAVPO1.528e-1534.68Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_RAT1.996e-1534.10Lens fiber major intrinsic protein (Fragment) OS=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05C15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834233 ID=CF834233; Name=CF834233; organism=Citrus sinensis; type=EST; length=621bp
TAGTAATCACCCCCTTAAGGAGCANTCTTNATCGNTTGATCTCCATCATG
CCGCCTTAAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGA
TGCCCTAAGGGCAGCCCTAGCAGAGTTCCTCTCAACTCTAATATTTGTCT
TTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGC
GCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGC
CCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTA
ATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTA
CGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATG
CTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCACATCTGCTTTTGCTC
TCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATG
ACATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCAAAGAA
GGGAAGCTTGGGGACAATTGCACCAATTGCAATTGGTTTCATTGTAAGAG
CCAACATCTTGGCGGGCGGGG
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