CF834233

Overview
NameCF834233
Unique NameCF834233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 58/179 (32.40%), Postives = 87/179 (48.60%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX--------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++TL+F++    + + +   T   A+                                 ISGGH+NPAVTFG F+   +SL+R +LY +AQ LG+     L+K   +         A +L+SG      +  EIV TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANSLASGYSRGAGLGAEIVGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 219          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.584e-15
Identity = 55/173 (31.79%), Postives = 80/173 (46.24%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAG 617
            RA  AEF  T+ +VF G G+ + +       A  P+                     ++SG H+NPAVTF   +G  +SL R I Y  AQLLG+     +L  VT        AL++   GV    A   EI +T   V  ++AT  + + G LG+++ +AIGF +    L G
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSVS-LAIGFSLTLGHLFG 175          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.905e-15
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX------NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++TL+F++    + + +   T   A+                               ISGGH+NPAVTFG F+   +SL+R +LY +AQ LG+     L+K   +         A +L+SG      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   42 RAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 217          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.294e-14
Identity = 53/171 (30.99%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++TL+F++    + + +   +                              ISGGH+NPAVTFG  +   +S++R ++Y +AQ LG  V   ++K +     N     A  ++SG     A+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   38 RALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANGGGANMVASGYSTGTALGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 207          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14
Identity = 58/171 (33.92%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK-FVTNGQTT---SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++TL+F++    + +   K T  G                           ISGGH+NPAVTFG F+   +SL+R + Y IAQ LG+      +K F+     T    A  ++ G     A+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   38 RALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKGTALGAEIIGTFVLVYTVF-SATDPKRSARDSHIPVLAPLPIGFAV 205          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTH---NGANTPSXXXXXXXXXXXXXXXXXXXXX---NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK----FVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++TL+F++    + + +   T    NGA+                            +SGGH+NPAVT G F+   +SL+R +LY  AQ LG+     L+K     + +     A  L++G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   39 RALIAEFVATLLFLYVTVATVIGYKHQTDAAVNGADAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQSSLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 214          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 58/174 (33.33%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  105 LRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NGQTTSAF-ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAG 617
            L+A  AEFL+TLIFVF G GS + +          PS                      +SGGH+NPA+T    VG  ISLLR + Y +AQL+G+     +L  +   N ++  A  AL++   A  AVV E+++TF L   V+++    +   +G+ A ++IG  V    L G
Sbjct:   11 LKAVFAEFLATLIFVFFGLGSALKWPSAM------PSVLQISLAFGLAIGTMAQALGP-VSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNLAVNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVG 176          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 57/173 (32.95%), Postives = 82/173 (47.40%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQ---TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAG 617
            RA LAEFL+TL+FVF G GS +       N                           ++SG H+NPAVT    VG ++S LR + Y  AQLLG+     LL  +T        +  AL++   A  AV  E+ +T  LV  ++A+  + +  ++GT A ++IGF V    L G
Sbjct:   11 RAVLAEFLATLLFVFFGLGSAL-------NWPQALPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVGTPA-LSIGFSVALGHLLG 175          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX----NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++TL+F++    + + +   T   A                              ISGGH+NPAVT G F+   +SL+R +LY +AQ LG+   C  +K   +   T     A  L+ G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 212          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.385e-14
Identity = 56/183 (30.60%), Postives = 86/183 (46.99%), Query Frame = 3
Query:   84 EATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXX----NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTS----AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            E T     RA +AEF++TL+F++    + + +   +   A                              ISGGH+NPAVTFG F+   +SL+R +LY +AQ LG+      +K   +    +    A  L+ G      +  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V
Sbjct:   29 ELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKRNARDSHVPVLAPLPIGFAV 210          
The following BLAST results are available for this feature:
BLAST of CF834233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
PIP22_MAIZE7.584e-1532.40Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
MIP_RANPI7.584e-1531.79Lens fiber major intrinsic protein OS=Rana pipiens... [more]
PIP21_MAIZE9.905e-1532.20Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP26_ORYSJ1.294e-1430.99Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP27_ARATH2.882e-1433.92Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP24_ORYSJ4.916e-1431.64Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
AQP5_SHEEP4.916e-1433.33Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP2_BOVIN4.916e-1432.95Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
PIP24_ARATH6.420e-1432.00Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP23_ARATH8.385e-1430.60Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05C15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834233 ID=CF834233; Name=CF834233; organism=Citrus sinensis; type=EST; length=621bp
TAGTAATCACCCCCTTAAGGAGCANTCTTNATCGNTTGATCTCCATCATG
CCGCCTTAAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGA
TGCCCTAAGGGCAGCCCTAGCAGAGTTCCTCTCAACTCTAATATTTGTCT
TTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGC
GCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGC
CCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTA
ATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTA
CGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATG
CTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCACATCTGCTTTTGCTC
TCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATG
ACATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCAAAGAA
GGGAAGCTTGGGGACAATTGCACCAATTGCAATTGGTTTCATTGTAAGAG
CCAACATCTTGGCGGGCGGGG
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