CF834233

Overview
NameCF834233
Unique NameCF834233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 56/171 (32.75%), Postives = 81/171 (47.37%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++T +F++    + M  +K T   A                          ISGGH+NPAVTFG F+   +SL R I Y I Q LG+     ++K        G    A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   58 RAGIAEFVATFLFLYITVLTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 225          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 56/177 (31.64%), Postives = 84/177 (47.46%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK------FVTNG----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++T +F++    + M   +  +  A+                         ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K      + TNG         +   SG+GA      EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   53 RAGIAEFIATFLFLYVTVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQPGLYQTNGGGANVVAHGYTKGSGLGA------EIVGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 220          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 55/171 (32.16%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++T +F++    + M  +K +   A                          ISGGH+NPAVTFG F+   +SL R I Y + Q LG+     ++K        G    A  ++SG    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   55 RAGIAEFVATFLFLYITILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 222          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 44/120 (36.67%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  279 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT------NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            NISGGH NPAV+  A + G ++L+  + YW++QLLG  +   L K V+      N    +   +        A+V EI++T  L   V   A++ K  + G +AP +IGF V  +ILAGG
Sbjct:   85 NISGGHFNPAVSLAAMLIGGLNLVMLLPYWVSQLLGGMLGAALAKAVSPEERFWNASGAAFVTVQEQGQVAGALVAEIILTTLLALAVCMGAINEK--TKGPLAPFSIGFAVTVDILAGG 202          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 55/171 (32.16%), Postives = 81/171 (47.37%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            RA +AEF++T +F++    + M  +K T   A                          ISGGH+NPAVTFG F+   +SL R + Y I Q LG+     ++K        G    A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   55 RAGIAEFVATFLFLYITILTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAV 222          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 52/172 (30.23%), Postives = 80/172 (46.51%), Query Frame = 3
Query:  105 LRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            L+  LAEFL+T   +FAG G+     K    GA T                       ++SG H+NPAVT G  V G     R   Y +AQ   +T A ++L+ +  G+     A   G     ++V E V+TF L++ + A A D +  ++G +A +A+G  +  N+L  G
Sbjct:   56 LQMLLAEFLATFFLMFAGLGAITVEEK---KGAVT---FPGVAVAWGAAVMAMVYAVGHVSGAHLNPAVTLGFAVAGRFPWRRAPAYALAQTAAATAASVVLRLMFGGRHAPVPATLPGGAHAQSLVIEFVITFYLMFVIMAVATDDQ--AVGHMAGVAVGGTIMLNVLFAG 219          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 51/173 (29.48%), Postives = 82/173 (47.40%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NGQTTSAF-ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAG 617
            +A  AEFL+TLIFVF G GS + +        +                         +SGGH+NPA+T    +G  ISLLR + Y  AQL+G+     +L ++   N +   A  AL++      A+V E+++TF L   ++++    +   +G+ A ++IG  V    L G
Sbjct:   12 KAVFAEFLATLIFVFFGLGSALKW-------PSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGILYWLAPLNARGNLAVNALNNNTTPGKAMVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVG 176          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.025e-11
Identity = 58/187 (31.02%), Postives = 87/187 (46.52%), Query Frame = 3
Query:   78 PREATHPDALRAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK--------FVTNGQTTSA--FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIV 596
            P E +     RA +AEF++T +F++    + M   +  +  A+                         ISGGH+NPAVTFG F+   +SL R + Y I Q LG+     ++K         +  G  T A  +   SG+GA      EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   43 PGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 220          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 55/172 (31.98%), Postives = 80/172 (46.51%), Query Frame = 3
Query:  108 RAALAEFLSTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG-----QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKK----GSLGTIAPIAIGFIV 596
            RAA+AEF +TL+ V     + +   + +  G    +                      ISGGH+NPAVTF   +   +SL R  LY +AQ +G+     L + +  G         A  L++G  A   VV E+V TF LVYTV+ +A DPK+      +  +AP+ IG  V
Sbjct:   35 RAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKRKARDSHVPVLAPLPIGLAV 202          
BLAST of CF834233 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.284e-11
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 3
Query:  279 NISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQ-----TTSAFAL-SSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVRANILAGG 620
            NISGGH NPAV+    + G +  +  I YW++QL G  +   L K V+  +     + +AFA+         A+  EIVMT  LV  V   A++ K  ++G +AP +IGF V  +ILAGG
Sbjct:   87 NISGGHFNPAVSLAVTLVGGLKTMLLIPYWVSQLFGGMIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGVEIVMTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGG 204          
The following BLAST results are available for this feature:
BLAST of CF834233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
PIP13_MAIZE4.601e-1232.75Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP15_ARATH6.009e-1231.64Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP11_ORYSJ6.009e-1232.16Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
AQP8_HUMAN6.009e-1236.67Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]
PIP12_MAIZE7.848e-1232.16Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
NIP14_ORYSJ7.848e-1230.23Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
AQP5_RAT7.848e-1229.48Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
PIP14_ARATH1.025e-1131.02Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP28_ORYSJ2.284e-1131.98Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
AQP8_RAT2.284e-1138.33Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05C15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834233 ID=CF834233; Name=CF834233; organism=Citrus sinensis; type=EST; length=621bp
TAGTAATCACCCCCTTAAGGAGCANTCTTNATCGNTTGATCTCCATCATG
CCGCCTTAAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGA
TGCCCTAAGGGCAGCCCTAGCAGAGTTCCTCTCAACTCTAATATTTGTCT
TTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGC
GCCAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGC
CCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTA
ATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTA
CGAGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATG
CTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCACATCTGCTTTTGCTC
TCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATG
ACATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCAAAGAA
GGGAAGCTTGGGGACAATTGCACCAATTGCAATTGGTTTCATTGTAAGAG
CCAACATCTTGGCGGGCGGGG
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