CF834611
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.441e-14 Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 2 Query: 167 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQ 472 +K ET SYLP ++ + + ++ Y+I GW P +E H P YW MWKLPM+G TDA VL EV K P++ VR+IG DN Q Q Sbjct: 17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQ 106
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.013e-13 Identity = 37/114 (32.46%), Postives = 58/114 (50.88%), Query Frame = 2 Query: 167 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPGV 508 +K T SYLPP+ + + +++ +++++GW P +E H P + YW MWKLPM+G TD +L E+ + P VR+IG DN Q Q + I + V Sbjct: 17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYRGTAV 118
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13 Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 2 Query: 140 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFI 487 M V LKK+ET SYLP ++ E + ++I + I GW P +E EKG + YW MWKLP++G V+ E+ +E+P VR + DN Q Q ++F+ Sbjct: 1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12 Identity = 38/106 (35.85%), Postives = 53/106 (50.00%), Query Frame = 2 Query: 170 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFI 487 K+ET SYLP + E + ++I YLI GW P +E H P YW MWKLPM+G V+ E+ + +P VR++G DN Q Q +F+ Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.309e-11 Identity = 35/106 (33.02%), Postives = 53/106 (50.00%), Query Frame = 2 Query: 170 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFI 487 K+ET SYLPP++ E + +I Y I GW P +E K + +YW MWKLP +G + VL E+ + YP V+++ DN Q ++F+ Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFV 105
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11 Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 2 Query: 176 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFI 487 ET +LPP++ + + +I Y+I GW P +E H P YW+ WKLP +G D V+ E+ + YP VRI+G D Q Q F+ Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11 Identity = 34/104 (32.69%), Postives = 49/104 (47.12%), Query Frame = 2 Query: 176 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFI 487 ET +LPP++ + + +I Y+I GW P +E H P YW+ WKLP +G D V+ E+ + YP VRI+G D Q Q F+ Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_GUITH (Ribulose bisphosphate carboxylase small chain OS=Guillardia theta GN=rbcS PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11 Identity = 35/107 (32.71%), Postives = 55/107 (51.40%), Query Frame = 2 Query: 185 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQ--CISFIAAKP 499 S+LP L+DE ++K+I Y I W +E W H ++ YW +W LP++G D V+ E+ +K P +V++ DN R V+ C+SFI +P Sbjct: 9 SFLPDLTDEQIVKQIQYAISKNWALNVE------WTDDPHPRNA------YWDLWGLPLFGIKDPAAVMFEINACRKAKPACYVKVNAFDNSRGVESCCLSFIVQRP 103 The following BLAST results are available for this feature:
BLAST of CF834611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834611 ID=CF834611; Name=CF834611; organism=Citrus sinensis; type=EST; length=651bpback to top |