Homology
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)
HSP 1 Score: 290.426 bits (742), Expect = 5.339e-78
Identity = 132/168 (78.57%), Postives = 148/168 (88.10%), Query Frame = 2
Query: 5 NRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPGV 508
NR QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IG DN RQVQCISFI AKPPGV
Sbjct: 13 NRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)
HSP 1 Score: 279.641 bits (714), Expect = 9.424e-75
Identity = 130/168 (77.38%), Postives = 148/168 (88.10%), Query Frame = 2
Query: 2 ANRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
A+RP AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIG DN RQVQCISFIA KP G
Sbjct: 16 ADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)
HSP 1 Score: 278.1 bits (710), Expect = 2.742e-74
Identity = 130/168 (77.38%), Postives = 148/168 (88.10%), Query Frame = 2
Query: 2 ANRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
A+RP AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIG DN RQVQCISFIA KP G
Sbjct: 16 ADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)
HSP 1 Score: 275.404 bits (703), Expect = 1.777e-73
Identity = 128/163 (78.53%), Postives = 145/163 (88.96%), Query Frame = 2
Query: 20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPGV 508
AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R IPCLEFELE G+VYREH++SPGYYDGRYWTMWKLPM+GC D++QVLKE+ E +K YP +F+RIIG DNKRQVQ ISFIA KPPGV
Sbjct: 20 AQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPPGV 182
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)
HSP 1 Score: 275.018 bits (702), Expect = 2.321e-73
Identity = 125/165 (75.76%), Postives = 144/165 (87.27%), Query Frame = 2
Query: 5 NRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKP 499
NR AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SPGYYDGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIG DN RQVQCISFIA P
Sbjct: 13 NRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)
HSP 1 Score: 273.863 bits (699), Expect = 5.171e-73
Identity = 127/161 (78.88%), Postives = 143/161 (88.82%), Query Frame = 2
Query: 20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPP 502
AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI GWIPCLEFELE +VYRE+++SPGYYDGRYW MWKLPM+GCTDATQVL E+ E K YP S +RIIG DNKRQVQCISFIA KPP
Sbjct: 20 AQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)
HSP 1 Score: 273.478 bits (698), Expect = 6.754e-73
Identity = 126/169 (74.56%), Postives = 147/169 (86.98%), Query Frame = 2
Query: 2 ANRPFLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
A R +AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP G
Sbjct: 12 ATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)
HSP 1 Score: 272.322 bits (695), Expect = 1.505e-72
Identity = 125/161 (77.64%), Postives = 141/161 (87.58%), Query Frame = 2
Query: 20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPP 502
AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD L KE++YL+R+ WIPC+EFELE G+VYREH +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIG DN RQVQCISFIA KPP
Sbjct: 16 AQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)
HSP 1 Score: 271.937 bits (694), Expect = 1.965e-72
Identity = 124/161 (77.02%), Postives = 141/161 (87.58%), Query Frame = 2
Query: 20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPP 502
AQA+MVAPF GLKSS+AFPAT+K NNDITSI SNGGRV CM+VWPP G KKFETLSYLP L+D L KE++YLIR+ WIPC+EFELE G+VYREH SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIG DN RQVQCISFIA KPP
Sbjct: 16 AQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match:
RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)
HSP 1 Score: 270.396 bits (690), Expect = 5.717e-72
Identity = 125/168 (74.40%), Postives = 143/168 (85.12%), Query Frame = 2
Query: 2 ANRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
A R +AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIG DN RQVQCISFIA KP G
Sbjct: 12 ATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
The following BLAST results are available for this feature:
BLAST of CF834611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 128
50 100 150 200 250 300 350 400 450 500 550 600 650 Expect = 5.34e-78 / Id = 78.57 Expect = 9.42e-75 / Id = 77.38 Expect = 2.74e-74 / Id = 77.38 Expect = 1.78e-73 / Id = 78.53 Expect = 2.32e-73 / Id = 75.76 Expect = 5.17e-73 / Id = 78.88 Expect = 6.75e-73 / Id = 74.56 Expect = 1.50e-72 / Id = 77.64 Expect = 1.97e-72 / Id = 77.02 Expect = 5.72e-72 / Id = 74.40 Sequence RBS_LACSA RBS_PYRPY RBS_MALSP RBS_BETVE RBS_MEDSA RBS_FAGCR RBS3_SOLTU RBS3B_ARATH RBS1A_ARATH RBS8_NICPL
Match Name E-value Identity Description
RBS_LACSA 5.339e-78 78.57 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY 9.424e-75 77.38 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP 2.742e-74 77.38 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE 1.777e-73 78.53 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA 2.321e-73 75.76 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR 5.171e-73 78.88 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU 6.754e-73 74.56 Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_ARATH 1.505e-72 77.64 Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS1A_ARATH 1.965e-72 77.02 Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS8_NICPL 5.717e-72 74.40 Ribulose bisphosphate carboxylase small chain 8B, ... [more]
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