CF834611

Overview
NameCF834611
Unique NameCF834611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.840e-71
Identity = 123/167 (73.65%), Postives = 139/167 (83.23%), Query Frame = 2
Query:    5 NRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            NR   AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G VYREH + PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIG DN RQVQCISF+A KPPG
Sbjct:   15 NRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.840e-71
Identity = 124/167 (74.25%), Postives = 140/167 (83.83%), Query Frame = 2
Query:    5 NRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            NR   AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIG DN RQVQCISF+A KP G
Sbjct:   15 NRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.840e-71
Identity = 121/162 (74.69%), Postives = 143/162 (88.27%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP G
Sbjct:   18 AQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.840e-71
Identity = 121/162 (74.69%), Postives = 143/162 (88.27%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP G
Sbjct:   18 AQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.321e-71
Identity = 122/162 (75.31%), Postives = 141/162 (87.04%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIG DN RQVQCISFIA KPPG
Sbjct:   18 AQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 8.256e-71
Identity = 124/162 (76.54%), Postives = 138/162 (85.19%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            A A MVAPFTGLKS + FP T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIG DN RQVQCISFIA KPPG
Sbjct:   17 AGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.078e-70
Identity = 122/168 (72.62%), Postives = 144/168 (85.71%), Query Frame = 2
Query:    2 ANRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            A R   AQASMV PFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP G
Sbjct:   12 ATRANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.839e-70
Identity = 123/168 (73.21%), Postives = 141/168 (83.93%), Query Frame = 2
Query:    2 ANRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            A R  +AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIG DN RQVQCISFIA KPPG
Sbjct:   12 ATRTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.402e-70
Identity = 123/161 (76.40%), Postives = 137/161 (85.09%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPP 502
            A A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIG DN RQVQCISFIA KPP
Sbjct:   17 AGAGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.097e-70
Identity = 121/168 (72.02%), Postives = 143/168 (85.12%), Query Frame = 2
Query:    2 ANRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            A R  +AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP G
Sbjct:   12 ATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of CF834611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_MANES4.840e-7173.65Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR4.840e-7174.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU4.840e-7174.69Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSA_SOLTU4.840e-7174.69Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS2_PETHY6.321e-7175.31Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_SOYBN8.256e-7176.54Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBSB_SOLTU1.078e-7072.62Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1_PETHY1.839e-7073.21Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS_GLYTA2.402e-7076.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TOBAC4.097e-7072.02Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834611 ID=CF834611; Name=CF834611; organism=Citrus sinensis; type=EST; length=651bp
CGCGAACCGCCCCTTTCTAGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTT
GGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATT
GGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCAC
CAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTG
TTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGG
TTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAAC
T
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