CF834611

Overview
NameCF834611
Unique NameCF834611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:88..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.097e-70
Identity = 121/162 (74.69%), Postives = 139/162 (85.80%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIG DNKRQVQC+SFIA KPPG
Sbjct:   19 AQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.097e-70
Identity = 119/162 (73.46%), Postives = 142/162 (87.65%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP G
Sbjct:   19 AQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.097e-70
Identity = 121/169 (71.60%), Postives = 144/169 (85.21%), Query Frame = 2
Query:    2 ANRPFLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            A R  + QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP G
Sbjct:   12 ATRTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.097e-70
Identity = 121/168 (72.02%), Postives = 143/168 (85.12%), Query Frame = 2
Query:    2 ANRPFLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            A R  +AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP G
Sbjct:   12 ATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.557e-69
Identity = 121/162 (74.69%), Postives = 140/162 (86.42%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YL+RS WIPCLEF   KG+V+RE+H+SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIG DN RQVQCISFIA KP G
Sbjct:   19 AQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.656e-69
Identity = 119/160 (74.38%), Postives = 137/160 (85.62%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKP 499
            AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YL++ GW+PCLEFE E G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIG DN RQVQCISFIA KP
Sbjct:   18 AQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.656e-69
Identity = 118/160 (73.75%), Postives = 139/160 (86.88%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKP 499
            AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIG DN RQVQC+SFIA KP
Sbjct:   20 AQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.656e-69
Identity = 118/162 (72.84%), Postives = 135/162 (83.33%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPPG 505
            AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIG DNKRQVQC+SFIA KP G
Sbjct:   20 AQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.469e-69
Identity = 122/161 (75.78%), Postives = 136/161 (84.47%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKPP 502
            A A MVAPFTGLKS +  P T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIG DN RQVQCISFIA KPP
Sbjct:   17 AGAGMVAPFTGLKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CF834611 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.469e-69
Identity = 121/160 (75.62%), Postives = 138/160 (86.25%), Query Frame = 2
Query:   20 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGLDNKRQVQCISFIAAKP 499
            AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIG DN RQVQCISFIA KP
Sbjct:   17 AQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
The following BLAST results are available for this feature:
BLAST of CF834611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS3_AMAHP4.097e-7074.69Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_NICSY4.097e-7073.46Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS1_SOLTU4.097e-7071.60Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_NICSY4.097e-7072.02Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MUSAC1.557e-6974.69Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN2.656e-6974.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR2.656e-6973.75Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_AMAHP2.656e-6972.84Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS4_SOYBN3.469e-6975.78Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_MESCR3.469e-6975.63Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834611 ID=CF834611; Name=CF834611; organism=Citrus sinensis; type=EST; length=651bp
CGCGAACCGCCCCTTTCTAGCTCAGGCCAGCATGGTCGCCCCCTTCACCG
GCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCAC
TGTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGC
TGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGA
GCACCACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGA
AGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTT
GGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATT
GGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCAC
CAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTG
TTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGG
TTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAAC
T
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