CF834862

Overview
NameCF834862
Unique NameCF834862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834862_ssr151 microsatellite CF834862_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2903 contig Csv1_Contig2903:643..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF834862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
UBIQ_PANTR7.455e-1196.88Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA7.455e-1196.88Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_NEUCR7.455e-1196.88Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_MOUSE7.455e-1196.88Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE7.455e-1196.88Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA7.455e-1196.88Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_KLULA7.455e-1196.88Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_ICTPU7.455e-1196.88Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN7.455e-1196.88Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE7.455e-1196.88Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834862 ID=CF834862; Name=CF834862; organism=Citrus sinensis; type=EST; length=278bp
TAGATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAGAAACA
GAGTTCAACTACCACAAACCAAAATAAACTTCAAATAGTTATTTAAGCTA
TTTCACCAATAGCCAGCAAACATTAACCAAGACAAACCGAAGCAAATAAG
ACACACACACACCCAGATGACCAAACTCAGAAACCTCCACGGAGTCGGAG
CACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCC
TTCCATCCTCAAGTTGTTTTCCAGCAAA
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