CF835413

Overview
NameCF835413
Unique NameCF835413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 7.501e-51
Identity = 110/217 (50.69%), Postives = 140/217 (64.52%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTD------YAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M  LI +INK+Q     LG    +       LP               LE++VGRDFLPRGSGIVTRRPL+LQL       D      + EFLH P   F DF+ +R+EI  +TDR+TGK+K IS  PI L IYSP+VVNLTL+DLPG+TKV V  QP  I + I  MV +Y++K + II+A++PAN D+A SDA++LA+EVDP G+RT GV+TKLD
Sbjct:    1 MDQLIPVINKLQDVFNTLGSDPLD-------LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 210          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.564e-48
Identity = 110/254 (43.31%), Postives = 149/254 (58.66%), Query Frame = 2
Query:  131 MATMTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQT--------------------------EGGT--------------DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            MA++  LI  +NK+Q    V+ D G + + L    P               LE++VGRDFLPRG+GIVTRRPLVLQL+                            E GT              ++ EFLH P K+F DF  +++EI +ET RI GK K IS IPI L ++SP+V+NLTL+DLPG+TKV +  QP  I + I+N++  Y+  P+C+ILA+SPAN D+  S+++KLAREVDP G+RT GV+TKLD
Sbjct:    1 MASLEDLIPTVNKLQ---DVMYDSGIDTLDL----PILAVVGSQSSGKSSILETLVGRDFLPRGTGIVTRRPLVLQLNNISPNSPLIEEDDNSVNPHDEVTKISGFEAGTKPLEYRGKERNHADEWGEFLHIPGKRFYDFDDIKREIENETARIAGKDKGISKIPINLKVFSPHVLNLTLVDLPGITKVPIGEQPPDIEKQIKNLILDYIATPNCLILAVSPANVDLVNSESLKLAREVDPQGKRTIGVITKLD 247          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 4.551e-48
Identity = 114/250 (45.60%), Postives = 143/250 (57.20%), Query Frame = 2
Query:  149 LIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQL-------------------------------------HQTEGGTD-----YAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LI  INK+Q A   LG  GG    +   LP               LE++VGRDFLPRG+GIVTRRPLVLQL                                     HQ EG ++     + EFLH P KKF +F  +RKEI  ETD++TG +  IS++PI L IYSP+V+ LTL+DLPGLTKV V  QP  I   I++M+  Y+ KP+ IIL+++ AN D+A SD +KLAREVDP G RT GVLTK+D
Sbjct:    5 LISTINKLQDALAPLG--GGSQSPI--DLPQITVVGSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRRPKKSEHAKVNQTANELIDLNINDDDKKKDESGKHQNEGQSEDNKEEWGEFLHLPGKKFYNFDEIRKEIVKETDKVTGANSGISSVPINLRIYSPHVLTLTLVDLPGLTKVPVGDQPPDIERQIKDMLLKYISKPNAIILSVNAANTDLANSDGLKLAREVDPEGTRTIGVLTKVD 250          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.853e-47
Identity = 109/236 (46.19%), Postives = 142/236 (60.17%), Query Frame = 2
Query:  146 SLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGT---------------------------DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            SL+ +INK+Q    ++G            LP               LE++VGRDFLPRGSG+VTRRPLVLQL+QT   +                           ++ EF H    +F +F  +++EI  ET+RI G +K IS+ PI L IYSP VV LTL+DLPGLT+VA+E QP  I E I++M+  Y+  P+ IILAI+PANQDI TSDA+KLA++VDP G+RT GVLTKLD
Sbjct:  136 SLLPIINKLQENAALIGSE--------ITLPQIIVVGSQSSGKSSVLENLVGRDFLPRGSGLVTRRPLVLQLYQTTTTSRNNVNENEDEDEDDNYYDNDNDDNSLEEWGEFGHTGTNRF-NFQEIKEEIERETERIAGPNKDISSEPIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMIIDYISNPNSIILAITPANQDIVTSDALKLAQQVDPLGKRTIGVLTKLD 362          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.853e-47
Identity = 102/217 (47.00%), Postives = 144/217 (66.36%), Query Frame = 2
Query:  143 TSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQT----EGGTD--YAEFLHA-PRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            +S+I ++NK+Q     LG           ALP               LE++VGRDFLPRG+ I TRRPL LQL QT    +GG+D  + EFLH  P ++  DF+ +R+EI  ET+R++G++K +S+IPI L I+SPNV++++L+DLPG+TKV V  QP  I   I  M+ +Y+++PSC+ILA+SPAN D+A SDA+++A   DP G RT GV+TKLD
Sbjct:   19 SSVIPIVNKLQDIFAQLGSQSTI------ALPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLRLQLVQTKPSSDGGSDEEWGEFLHHDPVRRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPVGDQPSDIEARIRTMILTYIKEPSCLILAVSPANTDLANSDALQIAGNADPDGHRTIGVITKLD 229          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.032e-47
Identity = 101/216 (46.76%), Postives = 141/216 (65.28%), Query Frame = 2
Query:  143 TSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTE----GGTD--YAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            +S+I ++NK+Q     LG           ALP               LE++VGRDFLPRG+ I TRRPLVLQL QT+    GG+D  + EF H P  +F DF+ +R+EI  ET+R+ G++K +++  I+L I SPNV+N+TL+DLPG+TKV V  QP  I   I  M+ SY+++ +C+ILA++PAN D+A SDA+++A  VDP G RT GV+TKLD
Sbjct:   35 SSVIPIVNKLQDIFAQLGSQSTI------ALPQVVVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKSRANGGSDDEWGEFRHLPETRFYDFSEIRREIEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGITKVPVGDQPSDIEARIRTMILSYIKQDTCLILAVTPANTDLANSDALQIASIVDPDGHRTIGVITKLD 244          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.261e-46
Identity = 102/224 (45.54%), Postives = 139/224 (62.05%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQLHQTE-------------GGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI +INK+Q     +G    +       LP               LES+VGRD LPRG+GIVTRRPL+LQL   +              G ++ +FLH   K +TDF  +R+EI +ET+R++G +K IS+ PI L I+SP+VVNLTL+DLPG+TKV V  QP+ I   I  ++  Y+  P+ IILA++ AN D+ATS+A+K+AREVDP G RT  V+TKLD
Sbjct:    1 MEALIPVINKLQDVFNTVGADIIQ-------LPQIAVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVDPEDRRKTSEENGVDGEEWGKFLHTKNKIYTDFDEIRQEIENETERVSGNNKGISDEPIHLKIFSPHVVNLTLVDLPGITKVPVGDQPKDIELQIRELILKYISNPNSIILAVTAANTDMATSEALKVAREVDPDGRRTLAVVTKLD 217          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 7.266e-46
Identity = 105/228 (46.05%), Postives = 137/228 (60.09%), Query Frame = 2
Query:  146 SLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQL-------------------HQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            SLI ++N++Q A + +G      +     LP               LE++VGRDFLPRG+GIVTRRPLVLQL                         +++ EFLH P +KF +F  +R+EI  ET+  TGK+  IS++PI L IYSP+V+ LTL+DLPGLTKV V  QP  I + I  MV  Y+ K + IILA++ AN D+A SD +KLAREVDP G RT GVLTK+D
Sbjct:    4 SLIKVVNQLQEAFSTVG------VQNLIDLPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRPSASGKNEETTTDSDGKDQNNSSEWGEFLHLPGQKFFEFEKIREEIVRETEEKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKYISKNNAIILAVNAANTDLANSDGLKLAREVDPEGLRTIGVLTKVD 225          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.761e-45
Identity = 102/225 (45.33%), Postives = 139/225 (61.78%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQL--------HQTEG------GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI +INK+Q     +G    +       LP               LES+VGRD LPRG+GIVTRRPL+LQL         +T G        ++ +FLH   K +TDF  +R+EI +ET+RI+G +K +S  PI L I+SPNVVNLTL+DLPG+TKV V  QP+ I   I  ++  ++  P+ IILA++ AN D+ATS+A+K++REVDP G RT  V+TKLD
Sbjct:    1 MEALIPVINKLQDVFNTVGADIIQ-------LPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLD 218          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44
Identity = 108/248 (43.55%), Postives = 136/248 (54.84%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQL----------HQTEGGTD---------------------------YAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M  LI L+N++Q    V    G + + L    P               LE++VG+DFLPRG+GIVTRRPL+LQL          H  E  +D                           YAEFLH P  KFTD   VR EI +ET R+ G +K I+ +PI L IYS  V+NLTLIDLPGLTK+ V  QP  I     +++  Y+ +P+ IILA+SPAN DI  S+ +KLAR VDP G+RT GVLTKLD
Sbjct:    1 MEQLIPLVNQLQDL--VYNTIGSDFLDL----PSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVTRRPLILQLINLKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDIVNSEGLKLARSVDPKGKRTIGVLTKLD 242          
The following BLAST results are available for this feature:
BLAST of CF835413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DYNA_DICDI7.501e-5150.69Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
DNM1_YEAST1.564e-4843.31Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
VPS1_YEAST4.551e-4845.60Vacuolar protein sorting-associated protein 1 OS=S... [more]
DYNB_DICDI3.853e-4746.19Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
DRP3B_ARATH3.853e-4747.00Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
DRP3A_ARATH5.032e-4746.76Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
DNM1L_DANRE3.261e-4645.54Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
VPS1_SCHPO7.266e-4646.05Vacuolar protein sorting-associated protein 1 OS=S... [more]
DNM1L_HUMAN2.761e-4545.33Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
YB68_SCHPO2.337e-4443.55Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835413 ID=CF835413; Name=CF835413; organism=Citrus sinensis; type=EST; length=773bp
CTTTGCTTTGCTCTCTGCACCTAAACCCATCTGCATCTTTGATCCCGCAT
TGCCTTACTTCTCTGATCCAAATCTTCGCATTTCTTGATCCAAGACCACA
AAAAAAGAAAAAAAAAAAGAAAAAGAAAAAATGGCGACGATGACGAGCTT
GATTGGTCTCATCAACAAAATCCAAAGAGCTTGTACTGTCTTAGGTGATC
ATGGCGGCGAGGGCATGTCCCTCTGGGAGGCTCTGCCTTCTGTCGCTGTT
GTTGGTGGCCAGAGTTCCGGTAAATCTTCGGTTTTGGAAAGCGTTGTTGG
GAGAGATTTTCTGCCTCGTGGATCCGGTATTGTCACAAGGAGGCCATTAG
TGCTGCAACTTCATCAGACAGAAGGGGGAACTGATTATGCAGAGTTTCTT
CATGCACCAAGGAAGAAGTTTACTGATTTTGCTGCTGTGCGTAAGGAGAT
ATCAGATGAAACAGATCGCATAACTGGAAAGTCAAAGCAGATCTCTAACA
TTCCTATTCAACTAAGCATATATTCTCCAAATGTTGTTAACTTAACCCTG
ATAGACCTTCCTGGCTTGACAAAGGTTGCTGTAGAGGGCCAGCCAGAGTC
TATAGTTGAAGATATTGAGAATATGGTTCGTTCTTATGTTGAGAAGCCCA
GCTGCATTATATTGGCCATTTCCCCTGCAAATCAAGATATTGCTACTTCA
GACGCTATAAAGCTGGCCAGAGAAGTTGATCCATCAGGTGAAAGAACATT
TGGAGTGCTAACAAAACTTGATC
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