CF835413

Overview
NameCF835413
Unique NameCF835413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44
Identity = 100/231 (43.29%), Postives = 139/231 (60.17%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQL--------HQTEG------------GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI +INK+Q     +G    +       LP               LES+VGRD LPRG+G+VTRRPL+LQL         +T G              ++ +FLH   K +TDF  +R+EI +ET+RI+G +K +S  PI L ++SPNVVNLTL+DLPG+TKV V  QP+ I   I  ++  ++  P+ IILA++ AN D+ATS+A+K++REVDP G RT  V+TKLD
Sbjct:    1 MEALIPVINKLQDVFNTVGADIIQ-------LPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEENGKFQSWRVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLD 224          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.987e-44
Identity = 102/238 (42.86%), Postives = 140/238 (58.82%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQL-------------------------HQTEG--GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI +INK+Q     +G    +       LP               LES+VGRD LPRG+GIVTRRPL+LQL                         H ++G    ++ +FLH   K +TDF  +R+EI +ET+RI+G +K +S  PI L I+SPNVVNLTL+DLPG+TKV V  QP+ I   I  ++  ++  P+ IILA++ AN D+ATS+A+K++REVDP G RT  V+TKLD
Sbjct:    1 MEALIPVINKLQDVFNTVGADIIQ-------LPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVAPEDKRKTTGEENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLD 231          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.800e-44
Identity = 100/238 (42.02%), Postives = 140/238 (58.82%), Query Frame = 2
Query:  140 MTSLIGLINKIQRACTVLGDHGGEGMSLWEALPXXXXXXXXXXXXXXXLESVVGRDFLPRGSGIVTRRPLVLQL-------------------------HQTEG--GTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            M +LI +INK+Q     +G    +       LP               LES+VGRD LPRG+G+VTRRPL+LQL                         H ++G    ++ +FLH   K +TDF  +R+EI +ET+RI+G +K +S  PI L ++SPNVVNLTL+DLPG+TKV V  QP+ I   I  ++  ++  P+ IILA++ AN D+ATS+A+K++REVDP G RT  V+TKLD
Sbjct:    1 MEALIPVINKLQDVFNTVGADIIQ-------LPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLD 231          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_PERFL (Interferon-induced GTP-binding protein Mx (Fragment) OS=Perca fluviatilis GN=mx PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.269e-31
Identity = 73/156 (46.79%), Postives = 106/156 (67.95%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTD-YAEFLHAP-RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ + + G + Y +  +    K+  D A V K+I D  D + G    IS+  I L I SP+V +LTLIDLPG+ +VAV+GQPE+I + I+ +++ ++++   I L + P N DIAT++A+K+A+EVDP GERT G+LTK D
Sbjct:   60 LPRGSGIVTRCPLELKMKRRQEGEEWYGKISYQDCEKEIEDPADVEKKIRDAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFIKRQETISLVVVPCNVDIATTEALKMAQEVDPDGERTLGILTKPD 215          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_ONCMY (Interferon-induced GTP-binding protein Mx OS=Oncorhynchus mykiss GN=mx PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 72/156 (46.15%), Postives = 104/156 (66.67%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP--RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ + + G ++   +      ++  D + V K+I +  D + G    IS+  I L I SP+V +LTLIDLPG+ +VAV+GQPE+I E I+ ++R ++ K   I L + P N DIAT++A+K+A+EVDP GERT G+LTK D
Sbjct:   59 LPRGSGIVTRCPLELKMKRKKEGEEWHGKISYQDHEEEIEDPSDVEKKIREAQDEMAGVGVGISDDLISLEIGSPDVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIRKFIMKQETISLVVVPCNVDIATTEALKMAQEVDPEGERTLGILTKPD 214          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_SHEEP (Interferon-induced GTP-binding protein Mx1 OS=Ovis aries GN=MX1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 73/157 (46.50%), Postives = 104/157 (66.24%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDY---AEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L + E   ++     FL     + +D + V KEIS+    I G+   IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R Y+ +   I L + PAN DIAT++A+++A++VDP G+RT G+LTK D
Sbjct:   90 LPRGSGIVTRCPLVLRLKKLEKEGEWKGKVSFLDR-EIEISDASQVEKEISEAQIAIAGEGMGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPHDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQDVDPQGDRTIGILTKPD 245          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_DICLA (Interferon-induced GTP-binding protein Mx OS=Dicentrarchus labrax GN=mx PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 71/156 (45.51%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQL-HQTEGGTDYAEFLHAP-RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++  + EG   Y +  +    +   D A V K+I +  ++I G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQPE+I + I+ +++ ++ K   I L + P N DIAT++A+ +A+ VDP GERT G+LTK D
Sbjct:   58 LPRGSGIVTRCPLELKMKRKNEGEEWYGKITYIGFEENIKDPADVEKKIREAQNKIAGPGSGISEDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFITKQETISLVVVPCNVDIATTEALNMAQRVDPDGERTLGILTKPD 213          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_EPICO (Interferon-induced GTP-binding protein Mx OS=Epinephelus coioides GN=mx PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.623e-29
Identity = 69/156 (44.23%), Postives = 102/156 (65.38%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFL--HAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ + + G ++   +      K+  D + V  +I +  D + G    IS+  I L I SP+V +LTLIDLPG+ +VAV+GQPE I + I+ +++ ++ +   I L + P N DIAT++A+K+A+EVDP GERT G+LTK D
Sbjct:   58 LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYRGCEKELEDPSDVENKIREAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPEDIGKQIKGLIQRFITRQETISLVVVPCNVDIATTEALKMAQEVDPDGERTLGILTKPD 213          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_RAT (Interferon-induced GTP-binding protein Mx1 OS=Rattus norvegicus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.623e-29
Identity = 70/156 (44.87%), Postives = 106/156 (67.95%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYA-EFLHAPRK-KFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L Q + G  ++ + ++   + + +  + V +EI+   + I G+  +IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+ ++  Y++K   I L + P+N DIAT++A+K+A+EVDP G+RT G+LTK D
Sbjct:   86 LPRGSGIVTRCPLVLKLKQLKQGEKWSGKVIYKDTEIEISHPSLVEREINKAQNLIAGEGLKISSDLISLEVSSPHVPDLTLIDLPGITRVAVGDQPADIEHKIKRLITEYIQKQETINLVVVPSNVDIATTEALKMAQEVDPQGDRTIGILTKPD 241          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_BOVIN (Interferon-induced GTP-binding protein Mx1 OS=Bos taurus GN=MX1 PE=2 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 3.623e-29
Identity = 72/156 (46.15%), Postives = 102/156 (65.38%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFT--DFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +     ++   +    K+    D + V KEIS+    I G+   IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R Y+ +   I L + PAN DIAT++A+++A+EVDP G+RT G+LTK D
Sbjct:   84 LPRGSGIVTRCPLVLRLKKLGNEDEWKGKVSFLDKEIEIPDASQVEKEISEAQIAIAGEGTGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPPDIEYQIKSLIRKYILRQETINLVVVPANVDIATTEALRMAQEVDPQGDRTIGILTKPD 239          
The following BLAST results are available for this feature:
BLAST of CF835413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DNM1L_MOUSE2.337e-4443.29Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
DNM1L_BOVIN3.987e-4442.86Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]
DNM1L_RAT6.800e-4442.02Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
MX_PERFL2.269e-3146.79Interferon-induced GTP-binding protein Mx (Fragmen... [more]
MX_ONCMY1.921e-3046.15Interferon-induced GTP-binding protein Mx OS=Oncor... [more]
MX1_SHEEP1.245e-2946.50Interferon-induced GTP-binding protein Mx1 OS=Ovis... [more]
MX_DICLA2.124e-2945.51Interferon-induced GTP-binding protein Mx OS=Dicen... [more]
MX_EPICO3.623e-2944.23Interferon-induced GTP-binding protein Mx OS=Epine... [more]
MX1_RAT3.623e-2944.87Interferon-induced GTP-binding protein Mx1 OS=Ratt... [more]
MX1_BOVIN3.623e-2946.15Interferon-induced GTP-binding protein Mx1 OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835413 ID=CF835413; Name=CF835413; organism=Citrus sinensis; type=EST; length=773bp
CTTTGCTTTGCTCTCTGCACCTAAACCCATCTGCATCTTTGATCCCGCAT
TGCCTTACTTCTCTGATCCAAATCTTCGCATTTCTTGATCCAAGACCACA
AAAAAAGAAAAAAAAAAAGAAAAAGAAAAAATGGCGACGATGACGAGCTT
GATTGGTCTCATCAACAAAATCCAAAGAGCTTGTACTGTCTTAGGTGATC
ATGGCGGCGAGGGCATGTCCCTCTGGGAGGCTCTGCCTTCTGTCGCTGTT
GTTGGTGGCCAGAGTTCCGGTAAATCTTCGGTTTTGGAAAGCGTTGTTGG
GAGAGATTTTCTGCCTCGTGGATCCGGTATTGTCACAAGGAGGCCATTAG
TGCTGCAACTTCATCAGACAGAAGGGGGAACTGATTATGCAGAGTTTCTT
CATGCACCAAGGAAGAAGTTTACTGATTTTGCTGCTGTGCGTAAGGAGAT
ATCAGATGAAACAGATCGCATAACTGGAAAGTCAAAGCAGATCTCTAACA
TTCCTATTCAACTAAGCATATATTCTCCAAATGTTGTTAACTTAACCCTG
ATAGACCTTCCTGGCTTGACAAAGGTTGCTGTAGAGGGCCAGCCAGAGTC
TATAGTTGAAGATATTGAGAATATGGTTCGTTCTTATGTTGAGAAGCCCA
GCTGCATTATATTGGCCATTTCCCCTGCAAATCAAGATATTGCTACTTCA
GACGCTATAAAGCTGGCCAGAGAAGTTGATCCATCAGGTGAAAGAACATT
TGGAGTGCTAACAAAACTTGATC
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