CF835413

Overview
NameCF835413
Unique NameCF835413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_SINCH (Interferon-induced GTP-binding protein Mx OS=Siniperca chuatsi GN=mx PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 70/156 (44.87%), Postives = 103/156 (66.03%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTD-YAEFLHAPRKK-FTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ + + G + Y +  +   ++   D A V K+I +  D + G    IS+  I L I SP V +LTLIDLPG+ +VAV+GQPE+I + I+ ++++++ K   I L + P N DIAT++A+ +A+ VDP GERT G+LTK D
Sbjct:   58 LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQNHEEEIEDPADVEKKIREAQDEMAGVGVGISDDLISLEIGSPGVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQTFITKQETISLVVVPCNVDIATTEALNMAQRVDPDGERTLGILTKPD 213          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX2_CANFA (Interferon-induced GTP-binding protein Mx2 OS=Canis familiaris GN=MX2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 74/159 (46.54%), Postives = 101/159 (63.52%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT-----EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +       G   Y +       +F D + V KEI    + I G+   IS+  I L I SP V +LTLIDLPG+T+VAV  QP+ I   I+ ++++Y++K   I L + P N DIAT++A+ +A+EVDP+G+RT GVLTK D
Sbjct:  143 LPRGSGIVTRCPLVLKLKRDPHKAWRGRISYRK----TELQFQDPSQVEKEIRQAQNIIAGQGLGISHELISLEITSPEVPDLTLIDLPGITRVAVGNQPQDIGVQIKALIKNYIQKQETINLVVVPCNVDIATTEALSMAQEVDPNGDRTIGVLTKPD 297          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_PHOVI (Interferon-induced GTP-binding protein Mx1 OS=Phoca vitulina GN=MX1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 73/160 (45.62%), Postives = 100/160 (62.50%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +        G   Y +F      + +D + V  EIS   + I G+ + IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I    + ++R Y+ K   I L + P N DIAT++A+ +A+EVDPSG+RT G+LTK D
Sbjct:   93 LPRGSGIVTRCPLVLKLKKLLNEDEWRGKVSYQDF----EMEISDPSEVEVEISKAQNVIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMAQEVDPSGDRTIGILTKPD 248          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_MOUSE (Interferon-induced GTP-binding protein Mx1 OS=Mus musculus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 70/156 (44.87%), Postives = 102/156 (65.38%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP--RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L + + G ++   +       + +D + V + I+   + I G    IS+  I L + SPNV +LTLIDLPG+T+VAV  QP  I   I+ ++++Y++K   I L + P+N DIAT++A+ +A+EVDP G+RT GVLTK D
Sbjct:   61 LPRGSGIVTRCPLVLKLRKLKEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGVLTKPD 216          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_ICTPU (Interferon-induced GTP-binding protein Mx1 OS=Ictalurus punctatus GN=mx1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 72/168 (42.86%), Postives = 104/168 (61.90%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQL--------------HQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++              ++ +   DY E +  P       A V K+I +  D + G    IS+  I L + S +V +LTLIDLPG+ +VAV+GQPE+I E I+ +++ ++ K   I L + P+N DIAT++A+K+A+EVDP+GERT G+LTK D
Sbjct:   59 LPRGSGIVTRCPLELKMKRSREEDFWHGKIKYKKDHDEDYEEEIQNP-------ADVEKKIREAQDHMAGVGVGISDELISLEVTSADVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIKKFITKQETINLVVVPSNVDIATTEALKMAQEVDPNGERTLGILTKPD 219          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX2_MOUSE (Interferon-induced GTP-binding protein Mx2 OS=Mus musculus GN=Mx2 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.348e-28
Identity = 69/156 (44.23%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP--RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +   G ++   +       + +D + V + I+   + I G    IS+  I L + SPNV +LTLIDLPG+T+VAV  QP  I   I+ ++++Y++K   I L + P+N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:   88 LPRGSGIVTRCPLVLKLRKLNEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 243          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_LARCR (Interferon-induced GTP-binding protein Mx OS=Larimichthys crocea GN=mx PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.067e-28
Identity = 70/163 (42.94%), Postives = 103/163 (63.19%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGT---------DYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ + + G          DY E +  P       A V K+I +  D++ G   +I++  I L I SP+V +LTLI LPG+ +VAV+ QPE+I + I+ +++ +++K   I L + P N DIAT++A+K+A+EVDP GERT  +LTK D
Sbjct:   58 LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQDYEEEIEVP-------ADVEKKIREAQDKMAGNGVEIADDLISLEIASPDVPDLTLIALPGIARVAVKKQPENIGDQIKRLIQKFIKKQETINLVVVPCNMDIATTEALKMAQEVDPDGERTLVILTKPD 213          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX2_PIG (Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa GN=MX2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 68/154 (44.16%), Postives = 95/154 (61.69%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGI+TR PL L+L + E              +  D + V +EI    D I G    IS+  I L + SP V +LTLIDLPG+T+VAV  QP+ I   I+ ++R Y+++   I L + P N DIAT++A+++A+EVDP G+RT G+LTK D
Sbjct:  140 LPRGSGIITRCPLALRLKKKECPWQGRISYRKVELQLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPD 293          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_CANFA (Interferon-induced GTP-binding protein Mx1 OS=Canis familiaris GN=MX1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +        G   Y +       + +D + V  EI+   D I G+ + IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I    + ++R Y+ K   I L + P N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:   91 LPRGSGIVTRCPLVLKLKKLINEDEWRGKVSYQD----TEMEISDPSEVEVEINKAQDAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPD 246          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX2_ICTPU (Interferon-induced GTP-binding protein Mx2 OS=Ictalurus punctatus GN=mx2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRK------KFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ ++      A+F H   K      +  D A V + I    + I G    IS+  I L + S NV +LT+IDLPG+T+VAV+ QPE+I +  + +++ ++ K   I L + P N DIAT++A+K+A EVDP+GERTFGVLTK D
Sbjct:   57 LPRGSGIVTRCPLELKMKKSRK----ADFWHGKIKYEDYEEEIEDPADVEQMIRKAQNEIAGTGMGISDKLISLEVTSSNVPDLTVIDLPGITRVAVKDQPENIGDQSKRLIKKFITKQETINLVVVPCNVDIATTEALKMALEVDPNGERTFGVLTKPD 212          
The following BLAST results are available for this feature:
BLAST of CF835413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MX_SINCH4.731e-2944.87Interferon-induced GTP-binding protein Mx OS=Sinip... [more]
MX2_CANFA8.070e-2946.54Interferon-induced GTP-binding protein Mx2 OS=Cani... [more]
MX1_PHOVI8.070e-2945.63Interferon-induced GTP-binding protein Mx1 OS=Phoc... [more]
MX1_MOUSE1.377e-2844.87Interferon-induced GTP-binding protein Mx1 OS=Mus ... [more]
MX1_ICTPU1.377e-2842.86Interferon-induced GTP-binding protein Mx1 OS=Icta... [more]
MX2_MOUSE2.348e-2844.23Interferon-induced GTP-binding protein Mx2 OS=Mus ... [more]
MX_LARCR3.067e-2842.94Interferon-induced GTP-binding protein Mx OS=Larim... [more]
MX2_PIG4.005e-2844.16Interferon-induced GTP-binding protein Mx2 OS=Sus ... [more]
MX1_CANFA5.231e-2844.38Interferon-induced GTP-binding protein Mx1 OS=Cani... [more]
MX2_ICTPU6.832e-2845.00Interferon-induced GTP-binding protein Mx2 OS=Icta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835413 ID=CF835413; Name=CF835413; organism=Citrus sinensis; type=EST; length=773bp
CTTTGCTTTGCTCTCTGCACCTAAACCCATCTGCATCTTTGATCCCGCAT
TGCCTTACTTCTCTGATCCAAATCTTCGCATTTCTTGATCCAAGACCACA
AAAAAAGAAAAAAAAAAAGAAAAAGAAAAAATGGCGACGATGACGAGCTT
GATTGGTCTCATCAACAAAATCCAAAGAGCTTGTACTGTCTTAGGTGATC
ATGGCGGCGAGGGCATGTCCCTCTGGGAGGCTCTGCCTTCTGTCGCTGTT
GTTGGTGGCCAGAGTTCCGGTAAATCTTCGGTTTTGGAAAGCGTTGTTGG
GAGAGATTTTCTGCCTCGTGGATCCGGTATTGTCACAAGGAGGCCATTAG
TGCTGCAACTTCATCAGACAGAAGGGGGAACTGATTATGCAGAGTTTCTT
CATGCACCAAGGAAGAAGTTTACTGATTTTGCTGCTGTGCGTAAGGAGAT
ATCAGATGAAACAGATCGCATAACTGGAAAGTCAAAGCAGATCTCTAACA
TTCCTATTCAACTAAGCATATATTCTCCAAATGTTGTTAACTTAACCCTG
ATAGACCTTCCTGGCTTGACAAAGGTTGCTGTAGAGGGCCAGCCAGAGTC
TATAGTTGAAGATATTGAGAATATGGTTCGTTCTTATGTTGAGAAGCCCA
GCTGCATTATATTGGCCATTTCCCCTGCAAATCAAGATATTGCTACTTCA
GACGCTATAAAGCTGGCCAGAGAAGTTGATCCATCAGGTGAAAGAACATT
TGGAGTGCTAACAAAACTTGATC
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