CF835413

Overview
NameCF835413
Unique NameCF835413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_PIG (Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa GN=MX1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 71/157 (45.22%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRK---KFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +     D  +   + R    + +D + V KE+S     I G+   IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+++++ Y+ K   I L + P N DIAT++A+++A+EVDP G+RT G+LTK D
Sbjct:   95 LPRGSGIVTRCPLVLKLKKLVNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPD 251          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_OTABY (Interferon-induced GTP-binding protein Mx1 OS=Otaria byronia GN=MX1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 70/160 (43.75%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +        G   Y +F      + +D + V  EI+   + I G+ + IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I    + +++ Y+ K   I L + P N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:   93 LPRGSGIVTRCPLVLKLKKLLNKDEWRGKVSYQDF----EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPD 248          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MXB_DANRE (Interferon-induced GTP-binding protein MxB OS=Danio rerio GN=mxb PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 71/160 (44.38%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTE------GGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ +++      G   Y        + F D A V K+I +  D + G    IS   I L I S NV +LTLIDLPG+ +VAV+GQPE+I + I+ ++R ++ K   I L + P N DIAT++A+++A+  DP GERT G+LTK D
Sbjct:   62 LPRGSGIVTRCPLELKMIRSKEDEKWHGRISYQNH----EEDFDDPAEVEKKIREAQDEMAGAGVGISEELISLQITSANVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRMFITKQETINLVVVPCNVDIATTEALQMAQAEDPEGERTLGILTKPD 217          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX2_SHEEP (Interferon-induced GTP-binding protein Mx2 OS=Ovis aries GN=MX2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 72/161 (44.72%), Postives = 101/161 (62.73%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTE----GGTDY---AEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGI+TR PLVL+L + E    G   Y    + LH P +       V +EI    + I G    IS+  I L + SP V +LTLIDLPG+T+VAVE QP+ I   I+ ++++Y+++   I L + P N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:  143 LPRGSGIITRCPLVLKLTKRECEWTGKITYRNVTQQLHNPSE-------VEREIRRAQNIIAGNGVGISHELINLEVTSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKTYIQRQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPD 296          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_PONAB (Interferon-induced GTP-binding protein Mx1 OS=Pongo abelii GN=MX1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 70/160 (43.75%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +        G   Y ++      + +D + V KEI+   + I G+   IS+  I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ +++ Y+++   I L + P+N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:   95 LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 250          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_MACMU (Interferon-induced GTP-binding protein Mx1 OS=Macaca mulatta GN=MX1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 71/160 (44.38%), Postives = 100/160 (62.50%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +        G   Y ++      +  D + V KEI+   + I G+   IS+  I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ ++R Y+++   I L + P+N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:   95 LPRGSGIVTRCPLVLKLKKLVNEDEWRGKVSYQDY----EIEILDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPPDIGYKIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 250          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_HUMAN (Interferon-induced GTP-binding protein Mx1 OS=Homo sapiens GN=MX1 PE=1 SV=4)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 70/160 (43.75%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +        G   Y ++      + +D + V KEI+   + I G+   IS+  I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ +++ Y+++   I L + P+N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:   95 LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 250          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_EUMJU (Interferon-induced GTP-binding protein Mx1 OS=Eumetopias jubatus GN=MX1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.923e-28
Identity = 70/160 (43.75%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +        G   Y +F      + +D + V  EI+   + I G+ + IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I    + +++ Y+ K   I L + P N DIAT++A+ +A EVDP G+RT G+LTK D
Sbjct:   93 LPRGSGIVTRCPLVLKLKKLLNKDEWRGKVSYQDF----EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVPCNVDIATTEALSMAEEVDPDGDRTIGILTKPD 248          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX3_RAT (Interferon-induced GTP-binding protein Mx3 OS=Rattus norvegicus GN=Mx3 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 68/156 (43.59%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP--RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +   G ++   +       + +D + V + I+   + I G    IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+ ++ +Y++K   I L + P+N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:   93 LPRGSGIVTRCPLVLKLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPSDIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQEVDPDGDRTIGILTKPD 248          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MSP1_SCHPO (Protein msp1, mitochondrial OS=Schizosaccharomyces pombe GN=msp1 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.988e-27
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = 2
Query:  284 LESVVGRDFLPRGSGIVTRRPLVLQL-HQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LE++VG +FLP+GS +VTRRP+ L L H  +    Y EF      K TDF+ ++  ++D  +     S+ + + PI+L+IY+ ++ NL+LIDLPG  ++  E QP  +   I  +   Y+ +P+ IILA+  A+ D+A S A++ +R VDP G RT GV+TK+D
Sbjct:  280 LEAIVGHEFLPKGSNMVTRRPIELTLVHSADTAIPYGEFSGVQLGKITDFSKIQHILTD-LNMAVPSSQGVDDNPIRLTIYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYIREPN-IILAVCAADVDLANSAALRASRRVDPLGLRTIGVVTKMD 441          
The following BLAST results are available for this feature:
BLAST of CF835413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MX1_PIG6.832e-2845.22Interferon-induced GTP-binding protein Mx1 OS=Sus ... [more]
MX1_OTABY6.832e-2843.75Interferon-induced GTP-binding protein Mx1 OS=Otar... [more]
MXB_DANRE8.923e-2844.38Interferon-induced GTP-binding protein MxB OS=Dani... [more]
MX2_SHEEP8.923e-2844.72Interferon-induced GTP-binding protein Mx2 OS=Ovis... [more]
MX1_PONAB8.923e-2843.75Interferon-induced GTP-binding protein Mx1 OS=Pong... [more]
MX1_MACMU8.923e-2844.38Interferon-induced GTP-binding protein Mx1 OS=Maca... [more]
MX1_HUMAN8.923e-2843.75Interferon-induced GTP-binding protein Mx1 OS=Homo... [more]
MX1_EUMJU8.923e-2843.75Interferon-induced GTP-binding protein Mx1 OS=Eume... [more]
MX3_RAT1.165e-2743.59Interferon-induced GTP-binding protein Mx3 OS=Ratt... [more]
MSP1_SCHPO1.988e-2740.24Protein msp1, mitochondrial OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835413 ID=CF835413; Name=CF835413; organism=Citrus sinensis; type=EST; length=773bp
CTTTGCTTTGCTCTCTGCACCTAAACCCATCTGCATCTTTGATCCCGCAT
TGCCTTACTTCTCTGATCCAAATCTTCGCATTTCTTGATCCAAGACCACA
AAAAAAGAAAAAAAAAAAGAAAAAGAAAAAATGGCGACGATGACGAGCTT
GATTGGTCTCATCAACAAAATCCAAAGAGCTTGTACTGTCTTAGGTGATC
ATGGCGGCGAGGGCATGTCCCTCTGGGAGGCTCTGCCTTCTGTCGCTGTT
GTTGGTGGCCAGAGTTCCGGTAAATCTTCGGTTTTGGAAAGCGTTGTTGG
GAGAGATTTTCTGCCTCGTGGATCCGGTATTGTCACAAGGAGGCCATTAG
TGCTGCAACTTCATCAGACAGAAGGGGGAACTGATTATGCAGAGTTTCTT
CATGCACCAAGGAAGAAGTTTACTGATTTTGCTGCTGTGCGTAAGGAGAT
ATCAGATGAAACAGATCGCATAACTGGAAAGTCAAAGCAGATCTCTAACA
TTCCTATTCAACTAAGCATATATTCTCCAAATGTTGTTAACTTAACCCTG
ATAGACCTTCCTGGCTTGACAAAGGTTGCTGTAGAGGGCCAGCCAGAGTC
TATAGTTGAAGATATTGAGAATATGGTTCGTTCTTATGTTGAGAAGCCCA
GCTGCATTATATTGGCCATTTCCCCTGCAAATCAAGATATTGCTACTTCA
GACGCTATAAAGCTGGCCAGAGAAGTTGATCCATCAGGTGAAAGAACATT
TGGAGTGCTAACAAAACTTGATC
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