CF835413

Overview
NameCF835413
Unique NameCF835413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_SOLSE (Interferon-induced GTP-binding protein Mx OS=Solea senegalensis GN=mx PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.596e-27
Identity = 68/156 (43.59%), Postives = 97/156 (62.18%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP--RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ +   G  +   +      ++  D A V K+I +   +I G    IS   I L I SP+V +LTLIDLPG+T+VAV GQP +I E I+ ++  ++ K   I L +   N D+AT++A+++A+E DP GERT G+LTK D
Sbjct:   58 LPRGSGIVTRCPLELKMKRKNDGEGWQGKISYQDHEEEIQDPADVEKKIEEAQIQIAGVGVGISENMISLEIASPDVPDLTLIDLPGITRVAVHGQPVNIGEQIKKLIHKFITKQETICLVVHACNVDLATTEALQMAQEEDPEGERTLGILTKPD 213          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MXA_DANRE (Interferon-induced GTP-binding protein MxA OS=Danio rerio GN=mxa PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 69/156 (44.23%), Postives = 98/156 (62.82%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP--RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PL L++ +T+    +   +      + F D A V K+I    D + G    IS   I L I S +V +LTLIDLPG+ +VAV+GQPE+I + I+ ++R +V +   I L + P N DIAT++A+++A+  DP GERT G+LTK D
Sbjct:   62 LPRGSGIVTRCPLELKMIRTKDQDRWHGRISYKTCEEDFDDPAEVEKKIRQAQDEMAGAGVGISEELISLQITSADVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRKFVTRQETINLVVVPCNVDIATTEALQMAQAEDPDGERTLGILTKPD 217          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX2_RAT (Interferon-induced GTP-binding protein Mx2 OS=Rattus norvegicus GN=Mx2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 67/156 (42.95%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAP--RKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +   G ++   +       + +D + V + I+   + I G    IS+  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+ ++ +Y++K   I L + P+N DIAT++A+ +A++VDP G+RT G+LTK D
Sbjct:   93 LPRGSGIVTRCPLVLKLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKRLITNYIQKQETINLVVVPSNVDIATTEALSMAQKVDPDGDRTIGILTKPD 248          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX2_BOVIN (Interferon-induced GTP-binding protein Mx2 OS=Bos taurus GN=MX2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 70/158 (44.30%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTE----GGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGI+TR PLVL+L + E    G   Y        ++  + + V  EI    + I G    IS+  I L I SP V +LTLIDLPG+T+VAVE QP+ I   I+ +++ Y+++   I L + P N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:  140 LPRGSGIITRCPLVLKLTKRECEWTGKITYRNIT----QQLQNPSEVEWEIRRAQNIIAGNGLGISHELINLEITSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKKYIQRQETINLVVVPCNVDIATTEALSMAQEVDPDGDRTIGILTKPD 293          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX2_HUMAN (Interferon-induced GTP-binding protein Mx2 OS=Homo sapiens GN=MX2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 69/159 (43.40%), Postives = 95/159 (59.75%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTE-----GGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +       G   Y         +  D   V KEI    + + G  + IS+  I L I SP V +LT+IDLPG+T+VAV+ QP  I   I+ +++ Y+++   I L + P N DIAT++A+ +A EVDP G+RT G+LTK D
Sbjct:  143 LPRGSGIVTRCPLVLKLKKQPCEAWAGRISYRN----TELELQDPGQVEKEIHKAQNVMAGNGRGISHELISLEITSPEVPDLTIIDLPGITRVAVDNQPRDIGLQIKALIKKYIQRQQTINLVVVPCNVDIATTEALSMAHEVDPEGDRTIGILTKPD 297          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX1_HORSE (Interferon-induced GTP-binding protein Mx1 OS=Equus caballus GN=MX1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.870e-26
Identity = 65/160 (40.62%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQT------EGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRGSGIVTR PLVL+L +       +G   Y +       + ++   V +++    + + G+   IS   + L + SP+V +LTLIDLPG+T+VAV  QP  I   I+ ++R Y+++   I L + P+N DIAT++A+ +A+EVDP G+RT G+LTK D
Sbjct:   95 LPRGSGIVTRCPLVLKLKRLVKEDEWKGKVSYRDI----EVEISNALDVEEQVRKAQNVLAGEGVGISQELVTLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKTLIRKYIQRQETINLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 250          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_ANAPL (Interferon-induced GTP-binding protein Mx OS=Anas platyrhynchos GN=MX PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 67/157 (42.68%), Postives = 94/157 (59.87%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRKKFTDF---AAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRG+GIVTR PL L+L +     ++   + + R   TD    + V   I +  D + G    IS   I L I SP V +LTLIDLPG+ +VA+  QP+ I E I+ +++  +     I L + P N DIAT++A+K+A+EVDP GERT G+LTK D
Sbjct:  156 LPRGNGIVTRCPLELKLKKIPTSQEWKGKI-SYRNISTDLQHASEVENAIRNAQDVVAGTKGNISGELISLEICSPYVPDLTLIDLPGIARVAMRNQPQDIGEQIKKLIKKIISSKETINLVVVPCNVDIATTEALKMAQEVDPKGERTLGILTKPD 311          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MXE_DANRE (Interferon-induced GTP-binding protein MxE OS=Danio rerio GN=mxe PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 65/156 (41.67%), Postives = 97/156 (62.18%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQLHQTEGGTDYAEFLHAPRK--KFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRG+GIVTR PLVL+L +      +   L    K  +  D A + K + +    + G  + IS+  I L I S +V +LTLIDLPG+ +VA   QPE I + I++++  ++++   I L + PAN DIAT++A+K+A  VDP+G+RT G+LTK D
Sbjct:   68 LPRGTGIVTRCPLVLKLKKITKDKSWHGLLTYNDKIRELKDPAKIEKAVLNAQTALAGIGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKSLIEKFIKRQETISLVVVPANIDIATTEALKMASTVDPTGQRTLGILTKPD 223          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MGM1_YEAST (Dynamin-like GTPase MGM1, mitochondrial OS=Saccharomyces cerevisiae GN=MGM1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 69/164 (42.07%), Postives = 98/164 (59.76%), Query Frame = 2
Query:  284 LESVVGRDFLPRGSGIVTRRPLVLQLHQTEGGTDY-AEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LES+VGR+FLP+GS +VTRRP+ L L  T    +  A+F         DF  V++ +  E +     S+ +S  PIQL+I S  V +L+L+DLPG  +V    QP  +   I ++   Y+  P+ IILAIS A+ D+A S A+K ++  DP G RT GV+TKLD
Sbjct:  227 LESIVGREFLPKGSNMVTRRPIELTLVNTPNSNNVTADFPSMRLYNIKDFKEVKRMLM-ELNMAVPTSEAVSEEPIQLTIKSSRVPDLSLVDLPGYIQVEAADQPIELKTKIRDLCEKYLTAPN-IILAISAADVDLANSSALKASKAADPKGLRTIGVITKLD 388          
BLAST of CF835413 vs. ExPASy Swiss-Prot
Match: MX_CTEID (Interferon-induced GTP-binding protein Mx OS=Ctenopharyngodon idella GN=mx PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.413e-25
Identity = 66/163 (40.49%), Postives = 97/163 (59.51%), Query Frame = 2
Query:  311 LPRGSGIVTRRPLVLQL---------HQTEGGTDYAEFLHAPRKKFTDFAAVRKEISDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVEDIENMVRSYVEKPSCIILAISPANQDIATSDAIKLAREVDPSGERTFGVLTKLD 772
            LPRG+GIVTR PLVL+L         HQ  G   Y +      KK  D A +   +      + G  + IS+  I L I S +V +LTLIDLPG+ +VA   QP+ I + I++++  Y+++   I L + PAN DIAT++A+++A +VD +G+RT G+LTK D
Sbjct:   68 LPRGTGIVTRCPLVLKLKKISKDNNWHQWHGLMSYRD----QTKKLKDPAEIENAVLKAQTVLAGTGEGISHEMITLEIQSSDVPDLTLIDLPGIARVATGNQPKDIEKQIKDLIEKYIKRQETISLVVVPANIDIATTEALQMASKVDSTGQRTLGILTKPD 226          
The following BLAST results are available for this feature:
BLAST of CF835413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MX_SOLSE2.596e-2743.59Interferon-induced GTP-binding protein Mx OS=Solea... [more]
MXA_DANRE4.428e-2744.23Interferon-induced GTP-binding protein MxA OS=Dani... [more]
MX2_RAT4.428e-2742.95Interferon-induced GTP-binding protein Mx2 OS=Ratt... [more]
MX2_BOVIN7.554e-2744.30Interferon-induced GTP-binding protein Mx2 OS=Bos ... [more]
MX2_HUMAN9.865e-2743.40Interferon-induced GTP-binding protein Mx2 OS=Homo... [more]
MX1_HORSE2.870e-2640.63Interferon-induced GTP-binding protein Mx1 OS=Equu... [more]
MX_ANAPL2.430e-2542.68Interferon-induced GTP-binding protein Mx OS=Anas ... [more]
MXE_DANRE2.430e-2541.67Interferon-induced GTP-binding protein MxE OS=Dani... [more]
MGM1_YEAST2.430e-2542.07Dynamin-like GTPase MGM1, mitochondrial OS=Sacchar... [more]
MX_CTEID5.413e-2540.49Interferon-induced GTP-binding protein Mx OS=Cteno... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01D06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835413 ID=CF835413; Name=CF835413; organism=Citrus sinensis; type=EST; length=773bp
CTTTGCTTTGCTCTCTGCACCTAAACCCATCTGCATCTTTGATCCCGCAT
TGCCTTACTTCTCTGATCCAAATCTTCGCATTTCTTGATCCAAGACCACA
AAAAAAGAAAAAAAAAAAGAAAAAGAAAAAATGGCGACGATGACGAGCTT
GATTGGTCTCATCAACAAAATCCAAAGAGCTTGTACTGTCTTAGGTGATC
ATGGCGGCGAGGGCATGTCCCTCTGGGAGGCTCTGCCTTCTGTCGCTGTT
GTTGGTGGCCAGAGTTCCGGTAAATCTTCGGTTTTGGAAAGCGTTGTTGG
GAGAGATTTTCTGCCTCGTGGATCCGGTATTGTCACAAGGAGGCCATTAG
TGCTGCAACTTCATCAGACAGAAGGGGGAACTGATTATGCAGAGTTTCTT
CATGCACCAAGGAAGAAGTTTACTGATTTTGCTGCTGTGCGTAAGGAGAT
ATCAGATGAAACAGATCGCATAACTGGAAAGTCAAAGCAGATCTCTAACA
TTCCTATTCAACTAAGCATATATTCTCCAAATGTTGTTAACTTAACCCTG
ATAGACCTTCCTGGCTTGACAAAGGTTGCTGTAGAGGGCCAGCCAGAGTC
TATAGTTGAAGATATTGAGAATATGGTTCGTTCTTATGTTGAGAAGCCCA
GCTGCATTATATTGGCCATTTCCCCTGCAAATCAAGATATTGCTACTTCA
GACGCTATAAAGCTGGCCAGAGAAGTTGATCCATCAGGTGAAAGAACATT
TGGAGTGCTAACAAAACTTGATC
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