CF835536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35 Identity = 71/83 (85.54%), Postives = 79/83 (95.18%), Query Frame = 2 Query: 2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 LRNKF CPIVN+DKLWS+VP+DVKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA Sbjct: 64 LRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 3.288e-35 Identity = 70/83 (84.34%), Postives = 79/83 (95.18%), Query Frame = 2 Query: 2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 LRNKF CPIVN+DKLWS+VP+DVKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA Sbjct: 64 LRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: RL27A_TETTH (60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.288e-22 Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDN--VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 +N HCP+VNIDKLWS+V + K ++D VP+IDVT+ G+FKVLGKG LP NQPVVVKAK SKTAE++I GGA VLTA Sbjct: 67 KNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.341e-20 Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 +N +CP VN+D+LW++VP++ K K S + P+ID + GYFKVLGKG+LP+ QP++VKAK S AE KIK AGGA +L A Sbjct: 65 KNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPLIVKAKFFSHEAENKIKAAGGACILVA 145
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.752e-20 Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 2 Query: 2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 LRN++HCP V+++K+W++VP+ V+ + N P++DVTQ G+FKVLG G+LP QP++VKA+ SK AEKKIK GGA +L A Sbjct: 64 LRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-TQPIIVKARYFSKVAEKKIKAVGGACILVA 148
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: RL27A_EUPCR (60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.483e-19 Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 2 Query: 2 LRNKFHCPIVNIDKLWSMVPQDVKAKASKDN--VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 +RN+++CP +N+ KLWS+V ++ + KA D V +IDV + GY+KVLGKG+LPE P+VVKAKL + TAEK+IK+ GGA VL A Sbjct: 64 MRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKLFTPTAEKRIKQVGGACVLRA 147
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 1.255e-18 Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 1.255e-18 Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 2.141e-18 Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
BLAST of CF835536 vs. ExPASy Swiss-Prot
Match: RL27A_MACFA (60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.141e-18 Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 2 Query: 5 RNKFHCPIVNIDKLWSMVPQDVKAKASKDNV---PMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 250 RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 65 RNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148 The following BLAST results are available for this feature:
BLAST of CF835536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835536 ID=CF835536; Name=CF835536; organism=Citrus sinensis; type=EST; length=347bpback to top |