CF835663

Overview
NameCF835663
Unique NameCF835663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835663 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.041e-34
Identity = 83/199 (41.71%), Postives = 121/199 (60.80%), Query Frame = 2
Query:  107 VTSKVIDFVEKLIVKWMYDS------SQPLHYLSGNFAPVPDETPPTKDLHVIGRLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIK-DGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYD 679
            + + ++D +E  IV  M  +      + P   LSGNFAPV +E P    L V+G++P CL G ++R G NP F P+AG+H FDGDGMIH + I  D + +Y  R+ +T+RL QE   G + F K IG+L G  GL  + +   RA + ++D + G G AN  +V+ +G+LLA+SE D PY VK+   GDL+T+G   +D
Sbjct:   69 LAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPV-NECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFD 266          
BLAST of CF835663 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.314e-32
Identity = 75/176 (42.61%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  164 SSQPLHYLSGNFAPVPDETPPTKDLHVIGRLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSY----GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYD 679
            S  P H LS NFAPV DE PPT    + G LP  LNG ++R GPNP+F P   YH FDGDGM+H ++I +GKAT  SR+V+T +   E+  G      +    G  G+     +      +VL   Y    G G ANT+L +   +L AL E+D PYAV++ E GD++T+G  D+D
Sbjct:  104 SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNV--FSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFD 277          
The following BLAST results are available for this feature:
BLAST of CF835663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED6_ARATH1.041e-3441.719-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD4_ARATH6.314e-3242.61Probable carotenoid cleavage dioxygenase 4, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835663 ID=CF835663; Name=CF835663; organism=Citrus sinensis; type=EST; length=684bp
GAGACAGAGACCCATTTAGAGAGTCATGGTGGAGAAAGAAAAGCTGGAGA
ACGACGTCGGAGCACGAAATGGAATAGTGGCGGTGAATCCCAAACCGAAG
AATGGAGTGACTTCGAAAGTGATAGACTTTGTGGAGAAACTGATAGTGAA
GTGGATGTACGATTCTTCACAGCCTCTTCATTATCTCTCCGGTAACTTCG
CTCCGGTTCCTGACGAGACTCCTCCTACTAAAGACCTCCACGTCATCGGC
CGTCTCCCCGATTGCTTGAATGGGGAGTTTGTCAGGGTTGGTCCTAACCC
CAAGTTTGCCCCTGTGGCCGGATACCACTGGTTTGATGGAGATGGCATGA
TTCATGGTCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCCGTTTT
GTGAGGACTTCACGTCTTAAACAGGAAGAATTTTTTGGAGGTGCTAAATT
TATGAAGATTGGAGACCTTAAGGGGCTATTTGGATTACTCATGGTTAACA
TGCAAATGCTTAGAGCAAAGTTGAAAGTACTGGATGTTTCATATGGAAAT
GGGACAGCTAATACAGCTCTTGTATATCACCATGGGAAACTTCTAGCACT
CTCAGAGGCGGACAAACCATATGCCGTCAAAGTTCTGGAAGATGGAGATC
TGCAAACACTTGGTATGATTGACTATGACAAAAG
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