CF835663
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835663 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.041e-34 Identity = 83/199 (41.71%), Postives = 121/199 (60.80%), Query Frame = 2 Query: 107 VTSKVIDFVEKLIVKWMYDS------SQPLHYLSGNFAPVPDETPPTKDLHVIGRLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIK-DGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYD 679 + + ++D +E IV M + + P LSGNFAPV +E P L V+G++P CL G ++R G NP F P+AG+H FDGDGMIH + I D + +Y R+ +T+RL QE G + F K IG+L G GL + + RA + ++D + G G AN +V+ +G+LLA+SE D PY VK+ GDL+T+G +D Sbjct: 69 LAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPV-NECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQVKIDGQGDLETIGRFGFD 266
BLAST of CF835663 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.314e-32 Identity = 75/176 (42.61%), Postives = 101/176 (57.39%), Query Frame = 2 Query: 164 SSQPLHYLSGNFAPVPDETPPTKDLHVIGRLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSY----GNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYD 679 S P H LS NFAPV DE PPT + G LP LNG ++R GPNP+F P YH FDGDGM+H ++I +GKAT SR+V+T + E+ G + G G+ + +VL Y G G ANT+L + +L AL E+D PYAV++ E GD++T+G D+D Sbjct: 104 SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNV--FSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETIGRYDFD 277 The following BLAST results are available for this feature:
BLAST of CF835663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835663 ID=CF835663; Name=CF835663; organism=Citrus sinensis; type=EST; length=684bpback to top |