CF835815

Overview
NameCF835815
Unique NameCF835815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.364e-35
Identity = 86/190 (45.26%), Postives = 113/190 (59.47%), Query Frame = 2
Query:   20 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            M+   V  A+V  +A+A  T     +V+SI++   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KR++AAF A  +HET                C+ +E   +  YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTALWFWMT   P
Sbjct:    1 MRSLAVVVAVVATVAMAIGTAH--GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTP-SAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAP 187          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.364e-35
Identity = 82/172 (47.67%), Postives = 104/172 (60.47%), Query Frame = 2
Query:   74 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            PT      V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KRE+AAF A  +HET                C+ +E   ++ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTA+WFWMT   P
Sbjct:   72 PTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTP-SAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAP 242          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.641e-34
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 2
Query:   95 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++ S ++   FD  +K++   SC GK+FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFKTALWFWMT   P
Sbjct:   78 DLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSP 241          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.655e-34
Identity = 77/172 (44.77%), Postives = 103/172 (59.88%), Query Frame = 2
Query:   74 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            PT     ++ SI++   FD  +K++   +C GK FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+ALWFWMT   P
Sbjct:   67 PTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSP 237          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.655e-34
Identity = 77/172 (44.77%), Postives = 103/172 (59.88%), Query Frame = 2
Query:   74 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            PT     ++ SI++   FD  +K++   +C GK FY+ +AF+NAA+++P FG SG     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+ALWFWMT   P
Sbjct:   72 PTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSP 242          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.142e-34
Identity = 77/165 (46.67%), Postives = 97/165 (58.79%), Query Frame = 2
Query:   95 NVASIVTPQFF-DGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++  ++T   F D +K++   SC GK FYT DAF+ AAKA+P FG+ G     KREIAAF A  +HET                CY+ E      YC   + Q+PC  G+ YYGRGPIQ++ N NYG AGKAIG D +  P+ VA D V+SFKTA WFWMT   P
Sbjct:   64 DIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYC-VPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSP 227          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.063e-33
Identity = 85/190 (44.74%), Postives = 111/190 (58.42%), Query Frame = 2
Query:   20 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            M+   V  A+V  +A+A  T     +V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+P FG+ GS +  KRE+AAF A  +HET                C+ +E   S+ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  V FKTA+WFWMT   P
Sbjct:    1 MRSLAVVVAVVATVAMAIGTAR--GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTP-SAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPP 187          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 142.51 bits (358), Expect = 1.389e-33
Identity = 80/172 (46.51%), Postives = 102/172 (59.30%), Query Frame = 2
Query:   74 PTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            PT      V+SIV+   FD  + ++   +C  K FYT DAF+ AA A+  FG+ G  +  KRE+AAF A  +HET                C+ +E   ++ YC   + Q+PC PGK YYGRGPIQL+ N NYG AG+AIG D LR P+ VA DP VSFKTA+WFWMT   P
Sbjct:   69 PTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTP-SAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAP 239          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.094e-33
Identity = 80/165 (48.48%), Postives = 98/165 (59.39%), Query Frame = 2
Query:   98 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEIN-KSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            VASI++P  FD  + ++   +CA K FYT DAF+ AA AYP F + G  +  KRE+AAF A  +HET                C+ EE N  +  YC E   ++PC  GK YYGRGPIQ+T N NYG AG+AIG D L  P+ VA D  VSFKTA WFWMT   P
Sbjct:   76 VASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYC-EPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSP 239          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.094e-33
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 2
Query:   98 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++S+++   F+  +K++   +C GK FYT DAFL+AAKA+P F + G     KREIAAF    +HET                C++ E N S  YC + + ++PC  GK YYGRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFKTALWFWMT   P
Sbjct:   68 LSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPST-YC-QASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSP 229          
The following BLAST results are available for this feature:
BLAST of CF835815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIC_SECCE7.364e-3545.26Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SECCE7.364e-3547.67Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIT_SOLTU1.641e-3446.06Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_TOBAC3.655e-3444.77Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC3.655e-3444.77Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIB_VITVI8.142e-3446.67Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_HORVU1.063e-3344.7426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU1.389e-3346.5126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI3_ORYSJ3.094e-3348.48Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_PEA3.094e-3346.34Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835815 ID=CF835815; Name=CF835815; organism=Citrus sinensis; type=EST; length=574bp
AAAAATGGCTCCTCTTAACATGAAAAAAAATATTGTAACCTTTGCTCTTG
TGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTAATGTGTCAAAATGTT
GCTAGCATTGTGACTCCCCAGTTCTTCGACGGCATAAAGAATCAGGCAGC
CGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAGATGCGTTTCTGAATG
CTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAG
CGTGAGATTGCTGCATTTTTTGCACACGTCACTCATGAAACTGGACATTT
GTGCTACATAGAAGAGATTAACAAGTCCAACCGGTACTGTGATGAACAAA
ACAAACAGTACCCATGTGTTCCCGGAAAGTTCTACTACGGCCGTGGACCG
ATCCAACTCACCGGAAATGGAAACTACGGAGCTGCCGGAAAAGCCATCGG
GTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCAAGGACCCCGTTGTGT
CATTTAAGACTGCCTTGTGGTTTTGGATGACCAATGTGCACCCAGTTATG
AACCAAGGTTTTGGTGCAACAATT
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