CF835815

Overview
NameCF835815
Unique NameCF835815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.041e-33
Identity = 75/164 (45.73%), Postives = 101/164 (61.59%), Query Frame = 2
Query:   98 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            +  I++   FD  +K++   +C  K FYT DAFL AAK++P FG+ GS +V KRE+AAF    +HET                C+++E N S+ YC   + +YPC PGK YYGRGP+QL+ N NYG  G+A+  + L  P+ VA D V+SFKTALWFWMT   P
Sbjct:    2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYC-APSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAP 164          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.041e-33
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 2
Query:  119 QFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            QF D +K++   +C  + FYT DAF+NAAK++P FG+ G     K+EIAAFF   +HET                C+ +E N S+ YC   + ++PC  GK YYGRGP+QL+ N NYG  G+AIG D L  P+ V+ DPV++FK A+WFWMT   P
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSP-SAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSP 233          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.176e-32
Identity = 75/165 (45.45%), Postives = 99/165 (60.00%), Query Frame = 2
Query:   95 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            +++++++   FD  +K++   +C  K FYT DAF+ AAKAYP FG+ G     KREIAAF    +HET                C++ E N S  YC     Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+ALWFWMT   P
Sbjct:   75 DLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPST-YCSA-TPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSP 237          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.176e-32
Identity = 75/165 (45.45%), Postives = 99/165 (60.00%), Query Frame = 2
Query:   95 NVASIVTPQFFDGI-KNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            +++++++   FD + K++   +C  K FYT DAF+ AAKAYP FG+ G     KREIAAF    +HET                C++ E N S  YC     Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+ALWFWMT   P
Sbjct:   74 DLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSA-TPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSP 236          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.621e-32
Identity = 75/164 (45.73%), Postives = 98/164 (59.76%), Query Frame = 2
Query:   98 VASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            V ++V+ + F+ +  ++  A+C  + FYT DA + AA A+P F + G  E  KRE+AAF    +HET                C+ EEI  +  YC   + ++PC P K Y+GRGPIQL+ N NYG AG+AIG D L  PE VA DPVVSFKTALWFWMT   P
Sbjct:   86 VEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYC-VPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSP 248          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.300e-31
Identity = 73/168 (43.45%), Postives = 97/168 (57.74%), Query Frame = 2
Query:   86 MCQNVASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            + QN++S+++   F+ I  ++   +C  K FYT +AF+ A K +  FG+ G      +EIAAF A  +HET                CY  E      YC   ++Q+PC PGK Y+GRGPIQ++ N NYGAAG AIG + L  P+ VA D VVSFKTALWFWMT   P
Sbjct:    1 LSQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYC-ASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQP 167          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.300e-31
Identity = 70/160 (43.75%), Postives = 97/160 (60.62%), Query Frame = 2
Query:  107 IVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            I + QF D +K++  A+C  + FYT +AF+ AAK++P FG+ G     K+E+AAFF   +HET                C+ +E N ++ YC E +  +PC  GK YYGRGP+QL+ N NYG  G+AIG D L  P+ VA D V++FK A+WFWMT   P
Sbjct:   90 ISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYC-EPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPP 248          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.698e-31
Identity = 74/160 (46.25%), Postives = 97/160 (60.62%), Query Frame = 2
Query:   98 VASIVTPQFFDGIK-NQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            V SIV    F+ +  ++   +C  + FYT +AFL AA A+P FG +G+ E  KRE+AAF    +HET                C+ +E N  + YC + + ++PC PG+ YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  VSFKTALWFWMT
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYC-QPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMT 247          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.217e-31
Identity = 72/165 (43.64%), Postives = 102/165 (61.82%), Query Frame = 2
Query:   95 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++++I++   FD  +K++   +C GKSFYT +AF+ AA+++  FG+ G     KRE+AAFFA  +HET                CY+ E      YC  Q+ Q+PC PG+ YYGRGPIQ++ N NYG  G+AIG + L  P+ VA + VVSFK+A+WFWMT   P
Sbjct:   84 DISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYC-VQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSP 247          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.896e-31
Identity = 71/166 (42.77%), Postives = 101/166 (60.84%), Query Frame = 2
Query:   95 NVASIVTPQFFDG-IKNQAAASCAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++ S+++   FD  +K++   +C GK+ FY+ +AF+NAA+++  FG+ G     KREIAAFFA  +HET                C++ E      YC     Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+A+WFWMT   P
Sbjct:   77 DIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSG-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSP 241          
The following BLAST results are available for this feature:
BLAST of CF835815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_CARPA4.041e-3345.73Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_BRANA4.041e-3345.51Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PHAVU1.176e-3245.45Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU1.176e-3245.45Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI9_ORYSJ7.621e-3245.73Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC1.300e-3143.45Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_ARATH1.300e-3143.75Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_ORYSJ1.698e-3146.25Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_TOBAC2.217e-3143.64Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI4_SOLTU2.896e-3142.77Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835815 ID=CF835815; Name=CF835815; organism=Citrus sinensis; type=EST; length=574bp
AAAAATGGCTCCTCTTAACATGAAAAAAAATATTGTAACCTTTGCTCTTG
TGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTAATGTGTCAAAATGTT
GCTAGCATTGTGACTCCCCAGTTCTTCGACGGCATAAAGAATCAGGCAGC
CGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAGATGCGTTTCTGAATG
CTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAG
CGTGAGATTGCTGCATTTTTTGCACACGTCACTCATGAAACTGGACATTT
GTGCTACATAGAAGAGATTAACAAGTCCAACCGGTACTGTGATGAACAAA
ACAAACAGTACCCATGTGTTCCCGGAAAGTTCTACTACGGCCGTGGACCG
ATCCAACTCACCGGAAATGGAAACTACGGAGCTGCCGGAAAAGCCATCGG
GTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCAAGGACCCCGTTGTGT
CATTTAAGACTGCCTTGTGGTTTTGGATGACCAATGTGCACCCAGTTATG
AACCAAGGTTTTGGTGCAACAATT
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