CF835815

Overview
NameCF835815
Unique NameCF835815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1125 contig Csv1_Contig1125:16..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.426e-31
Identity = 78/166 (46.99%), Postives = 99/166 (59.64%), Query Frame = 2
Query:   98 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKS--NRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            VASIV+   FD  + ++  A+C  K+FYT DAF+ AA A+P F + G     KRE+AAF A  +HET                C+ EE N +  + YC  Q+ Q+PC  GK YYGRGPIQ++ N NYG AG+AIG + L  P+ VA D  VSFKTA WFWMT   P
Sbjct:   79 VASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYC-VQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSP 243          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.100e-30
Identity = 71/163 (43.56%), Postives = 96/163 (58.90%), Query Frame = 2
Query:  104 SIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            S++T + FD  + ++    C  + FYT DAF+ AAK++P F + G     KRE+AAF A  +HET                 CY  E+N ++ YC + +  YPC PGK Y+GRGP+QLT N NYG  G+AIG D L  P+ +A DP +SFK+A WFWMT   P
Sbjct:   74 SLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YC-QWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSP 234          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 71/161 (44.10%), Postives = 93/161 (57.76%), Query Frame = 2
Query:   95 NVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            +V  +V    FD  +K +    CAG  FYT DAF+ AA+++  FG+ G     K+E+AAF A  +HET                C++ E N    YC    K +PC PGK YYGRGPIQLT N NYG AG+AI  D +  P+ ++ +P VSFKTA+WFWMT
Sbjct:   79 DVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSP--KDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMT 237          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  155 SCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            +C  + FYT DAF+ AA+++P F + G     KREIAAF A  +HET                 CY  E+N  + YC   +  YPC PGK Y+GRGP+QL+ N NYG  G+AIG D L  P+ ++ DP +SFK+A WFWMT   P
Sbjct:   72 ACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC-ASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSP 215          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = 2
Query:  155 SCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH--------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            +C  + FYT DAF+ AA+++P F + G     KREIAAF A  +HET                 CY  E+N  + YC   +  YPC PGK Y+GRGP+QL+ N NYG  G+AIG D L  P+ ++ DP +SFK+A WFWMT   P
Sbjct:   94 ACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC-ASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSP 237          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.316e-30
Identity = 77/167 (46.11%), Postives = 98/167 (58.68%), Query Frame = 2
Query:   98 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS--GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNR--YCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            VASIV+   FD  + ++  A+C   +FYT DAF+ AA A+P F +  G  + +KRE+AAF A  +HET                C+ EE   +    YC +Q+ Q+PC  GK YYGRGPIQL+ N NYG AG+AIG D L  P+ VA D  VSF TA WFWMT   P
Sbjct:   81 VASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYC-QQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSP 246          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.217e-29
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAAS-CAGK-SFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++  +++   FD + N    + C GK +FY+ +AF++AA ++P FG+ G     KREIAAFFA  +HET                C++ E      YC   N Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D ++SFK+A+WFWMT   P
Sbjct:   65 DLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSN-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSP 229          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.075e-29
Identity = 77/186 (41.40%), Postives = 102/186 (54.84%), Query Frame = 2
Query:   20 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFD---GIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET---------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGF--DGLRAPETVAKDPVVSFKTALWFWMT 532
            MK NIV+   +  L   F T  + QN  SIVT + F+     +N  A  C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET         G  C++ +I++S+RY                YGRGPIQLT   NY  AG+ IG   D +  P+ VA DP++SF+TA+WFWMT
Sbjct:    1 MKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDA--CPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDRY----------------YGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMT 168          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.711e-29
Identity = 79/168 (47.02%), Postives = 96/168 (57.14%), Query Frame = 2
Query:   56 ILALAFP-----TKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNRYC--DEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            +LAL+F      T  + QNV SIVT   FD  +KN+  A C    FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET       +   +  YC   E N+      G  YYGRGPIQLTG  NY  AGKAI  D +  P+ VA D  VSFKTA+WFWMT
Sbjct:    7 VLALSFVVFLFLTGTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQM-----GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMT 169          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.711e-29
Identity = 77/186 (41.40%), Postives = 102/186 (54.84%), Query Frame = 2
Query:   20 MKKNIVTFALVGILALAFPTKVMCQNVASIVTPQFFD---GIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET---------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGF--DGLRAPETVAKDPVVSFKTALWFWMT 532
            MK NIV+   +  L   F T  + QN  SIVT + F+     +N  A  C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET         G  C++++I +S+RY                YGRGPIQLT   NY  AG+ IG   + +  P+ VA DP++SFKTA+WFWMT
Sbjct:    1 MKFNIVSPVALSCLFFLFLTGTLAQNAGSIVTRELFEQMLSFRNNDA--CPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDRY----------------YGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMT 168          
The following BLAST results are available for this feature:
BLAST of CF835815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_ORYSJ8.426e-3146.99Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_THECC1.100e-3043.56Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIX_PEA2.452e-3044.10Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_GOSHI5.462e-3044.83Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI5.462e-3044.83Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI12_ORYSJ9.316e-3046.11Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_SOLTU1.217e-2941.57Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIA_SOLCI2.075e-2941.40Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIT_PETHY2.711e-2947.02Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIA_SOLLC2.711e-2941.40Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835815 ID=CF835815; Name=CF835815; organism=Citrus sinensis; type=EST; length=574bp
AAAAATGGCTCCTCTTAACATGAAAAAAAATATTGTAACCTTTGCTCTTG
TGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTAATGTGTCAAAATGTT
GCTAGCATTGTGACTCCCCAGTTCTTCGACGGCATAAAGAATCAGGCAGC
CGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAGATGCGTTTCTGAATG
CTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAG
CGTGAGATTGCTGCATTTTTTGCACACGTCACTCATGAAACTGGACATTT
GTGCTACATAGAAGAGATTAACAAGTCCAACCGGTACTGTGATGAACAAA
ACAAACAGTACCCATGTGTTCCCGGAAAGTTCTACTACGGCCGTGGACCG
ATCCAACTCACCGGAAATGGAAACTACGGAGCTGCCGGAAAAGCCATCGG
GTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCAAGGACCCCGTTGTGT
CATTTAAGACTGCCTTGTGGTTTTGGATGACCAATGTGCACCCAGTTATG
AACCAAGGTTTTGGTGCAACAATT
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