CF835815

Overview
NameCF835815
Unique NameCF835815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.540e-29
Identity = 69/166 (41.57%), Postives = 97/166 (58.43%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAAS-CAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++  +++   FD + N    + C GK+ FY+ +AF+ AA ++P FG+ G     KREIAAF A  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA DPV+SFK+A+WFWMT   P
Sbjct:   71 DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSP 235          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.540e-29
Identity = 71/157 (45.22%), Postives = 94/157 (59.87%), Query Frame = 2
Query:   98 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            VAS+VT   F+  + ++  A+C  + FY   AF+ AA A+P F + G  +  KRE+AAF A  +H T         CY E    ++ +C   N ++PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTALW WMT   P
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFC-VPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSP 252          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.540e-29
Identity = 71/157 (45.22%), Postives = 94/157 (59.87%), Query Frame = 2
Query:   98 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            VAS+VT   F+  + ++  A+C  + FY   AF+ AA A+P F + G  +  KRE+AAF A  +H T         CY E    ++ +C   N ++PC PGK Y+ RGP+Q+  N NYGAAG+AIG D L  PE VA DP V+FKTALW WMT   P
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFC-VPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSP 252          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.540e-29
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAAS-CAGK-SFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++  +++   FD + N    + C GK +FY+ +AF++AA ++P FG+ G     KREIAAFFA  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+A+WFWMT   P
Sbjct:   67 DLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSP 231          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.757e-28
Identity = 74/178 (41.57%), Postives = 99/178 (55.62%), Query Frame = 2
Query:   44 ALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS--GSPEVSKREIAAFFAHVTHETGH------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            A   +LA+A  +    Q V S++T   F+  + N+  + C  + FYT DAF+ AA ++P FG+  GS E+ +RE+AAFF   +HET               C+ EEINK+                  YYGRGPIQLTG  NY AAG A+G D +  P+ V+ D VVSFKTA+WFWMT
Sbjct:   15 AAASLLAVA-ASGAAAQGVGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKAT--------------SPPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMT 177          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.757e-28
Identity = 68/166 (40.96%), Postives = 97/166 (58.43%), Query Frame = 2
Query:   95 NVASIVTPQFFDGIKNQAAAS-CAGKS-FYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++  +++   FD + N    + C GK+ FY+ +AF++AA ++P FG+ G     KREIAAF A  +HET                C++ E      YC   + Q+PC PG+ Y+GRGPIQ++ N NYG  G+AIG D L  P+ VA D V+SFK+A+WFWMT   P
Sbjct:   67 DLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSS-QWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSP 231          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.112e-28
Identity = 73/170 (42.94%), Postives = 92/170 (54.12%), Query Frame = 2
Query:   65 LAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET------------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            L F T    Q+V +IVT   F+  +KN+    C  K FYT DAF+ AA ++P FG+ G     K+EIAAFF   +HET            G  C++ E N+                G  +YGRGPIQLTG  NY  AG+AIG D +  P+ VA D  VSFKTA+WFWMT
Sbjct:    8 LLFLTGSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQM---------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMT 162          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.112e-28
Identity = 67/147 (45.58%), Postives = 85/147 (57.82%), Query Frame = 2
Query:  134 IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQ-YPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWM 529
            + N+   SC GK FYT DA+  A + YP FG +G  +  KRE+AAFFA  + ET                C + E+N ++ YCD + K  YPCV    YYGRGP+QL  N NYG  G  +G + L  PE VA DPV+SF+ ALWFWM
Sbjct:   76 LPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWM 220          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.942e-27
Identity = 71/164 (43.29%), Postives = 91/164 (55.49%), Query Frame = 2
Query:   98 VASIVTPQFFDGI-KNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH-------------LCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            ++ I+    FD + K +  A C    FYT +AF++AAK +P FG+ G   + KREIAAF    +HET                CY++EIN    YCD  +  Y CV GK Y GRGPIQL+ N NYG  G  +    L+ PE V  DPV+SFKTA+WFWM    P
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSN-YQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSP 250          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.148e-26
Identity = 69/176 (39.20%), Postives = 94/176 (53.41%), Query Frame = 2
Query:   44 ALVGILALAFPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGSGSPEVSKR-EIAAFFAHVTHET-----------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            AL   +   F T  + Q + SIVT   F+  +KN+    C    FYT DAF+ AA ++P FG+   + ++R EIAAFF   +HET           G  C++ + ++S+RY                YGRGPIQLT   NY  AG AIG + +  P+ VA D  +SFKTA+WFWMT
Sbjct:    9 ALFCCVFFLFLTGSLAQGIGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDRY----------------YGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMT 168          
The following BLAST results are available for this feature:
BLAST of CF835815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIC_SOLLC3.540e-2941.57Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI7_ORYSJ3.540e-2945.22Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.540e-2945.22Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI1_SOLTU3.540e-2941.57Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI8_ORYSJ1.757e-2841.57Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_SOLTU1.757e-2840.96Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_SOLLC5.112e-2842.94Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_POPTR5.112e-2845.58Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI6_POPTR1.942e-2743.29Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIQ_TOBAC2.148e-2639.20Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835815 ID=CF835815; Name=CF835815; organism=Citrus sinensis; type=EST; length=574bp
AAAAATGGCTCCTCTTAACATGAAAAAAAATATTGTAACCTTTGCTCTTG
TGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTAATGTGTCAAAATGTT
GCTAGCATTGTGACTCCCCAGTTCTTCGACGGCATAAAGAATCAGGCAGC
CGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAGATGCGTTTCTGAATG
CTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAG
CGTGAGATTGCTGCATTTTTTGCACACGTCACTCATGAAACTGGACATTT
GTGCTACATAGAAGAGATTAACAAGTCCAACCGGTACTGTGATGAACAAA
ACAAACAGTACCCATGTGTTCCCGGAAAGTTCTACTACGGCCGTGGACCG
ATCCAACTCACCGGAAATGGAAACTACGGAGCTGCCGGAAAAGCCATCGG
GTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCAAGGACCCCGTTGTGT
CATTTAAGACTGCCTTGTGGTTTTGGATGACCAATGTGCACCCAGTTATG
AACCAAGGTTTTGGTGCAACAATT
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