CF835815

Overview
NameCF835815
Unique NameCF835815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.663e-26
Identity = 68/167 (40.72%), Postives = 89/167 (53.29%), Query Frame = 2
Query:   71 FPTKVMCQNVASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFG-SGSPEVSKREIAAFFAHVTHET-----------GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            F T  + Q + SIVT   F+  +KN+    C    FYT DAF+ AA ++P FG SG     ++EIAAFF   +HET           G  C++ + ++S+RY                YGRGPIQLT   NY  AG AI  D +  P+ VA D  +SFKTA+WFWMT
Sbjct:   18 FLTGSLAQGIGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDRY----------------YGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMT 168          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 3.663e-26
Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  107 IVTPQFFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGH------------LCYIEEINKS-NRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMT 532
            +VT   FD + +     C  + FY+  +FL AA+++P FG+ G     KRE+AAF AH++  T              LC+I     + N +C   +  +PC  GK Y  RGPIQLT N NYG AG+AIG D ++ P+ V KDP++SFKTALWFWM+
Sbjct:  133 VVTEPLFDQMFSHRK-DCPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVENPHAWGLCHINTTTVTENDFCTSSD--WPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMS 285          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 67/152 (44.08%), Postives = 91/152 (59.87%), Query Frame = 2
Query:   98 VASIVTPQFFDG-IKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHET-GHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            V SI+T   F+  + ++    C G +FYT DAF+ AA  +P+FG+ G+ E  +RE+AAFF   +HET G      +   +  YC   N+  P  P   YYGRGPIQLT   NY  AG A+G D +  P+ V+ DPVV+F+TA+WFWMT   P
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYC-RVNEITPSDPP--YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSP 174          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 61/127 (48.03%), Postives = 76/127 (59.84%), Query Frame = 2
Query:  167 KSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            + FYT DAF+ AAK++P F + GS +V KRE+AAF A  +HET           +  +    +  Y       Y+GRGPIQ++ N NYGAAGKAIG D LR P+ V  D  V FKTALWFWMT   P
Sbjct:   17 RGFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHET-----------TGGWPTAPDGPYELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSP 132          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.947e-19
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  269 FAHVTHETGHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWF 523
            FAHVTHETG+          N YCD    Q PC  GK YYGRGPIQ++ N NYG AG+AIG DGL  P+ VA+D +  +KTAL F
Sbjct:   24 FAHVTHETGN----------NAYCDPSKTQKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXF 98          
BLAST of CF835815 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 53/142 (37.32%), Postives = 68/142 (47.89%), Query Frame = 2
Query:  122 FFDGIKNQAAASCAGKSFYTRDAFLNAAKAYPQFGS-GSPEVSKREIAAFFAHVTHETGHLCYIEEINKSNRYCDEQNKQYPCVPGKFYYGRGPIQLTGNGNYGAAGKAIGFDGLRAPETVAKDPVVSFKTALWFWMTNVHP 544
            F D +K +    C    FYT +AF++AAK +P FG+ G   + KREIAAF    +HET                   N  +P   G   Y  G   +  N NYG  G  +    L+ PE V  DP ++FKTALWFWMT   P
Sbjct:   94 FDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHET-------------------NGWWPAAQGD-QYDWGYCHM--NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSP 213          
The following BLAST results are available for this feature:
BLAST of CF835815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIP_TOBAC3.663e-2640.72Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
AGI_URTDI3.663e-2642.31Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI11_ORYSJ1.539e-2444.08Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA2.625e-2448.03Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
IAMY_COILA1.947e-1955.29Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]
CHIB_POPTR1.000e-1537.32Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01O23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835815 ID=CF835815; Name=CF835815; organism=Citrus sinensis; type=EST; length=574bp
AAAAATGGCTCCTCTTAACATGAAAAAAAATATTGTAACCTTTGCTCTTG
TGGGCATTCTTGCCCTAGCTTTTCCCACCAAAGTAATGTGTCAAAATGTT
GCTAGCATTGTGACTCCCCAGTTCTTCGACGGCATAAAGAATCAGGCAGC
CGCGAGTTGTGCCGGCAAGAGCTTCTACACGAGAGATGCGTTTCTGAATG
CTGCCAAGGCTTATCCTCAATTTGGTAGCGGCTCTCCTGAAGTTTCGAAG
CGTGAGATTGCTGCATTTTTTGCACACGTCACTCATGAAACTGGACATTT
GTGCTACATAGAAGAGATTAACAAGTCCAACCGGTACTGTGATGAACAAA
ACAAACAGTACCCATGTGTTCCCGGAAAGTTCTACTACGGCCGTGGACCG
ATCCAACTCACCGGAAATGGAAACTACGGAGCTGCCGGAAAAGCCATCGG
GTTTGACGGATTAAGAGCTCCGGAAACGGTGGCCAAGGACCCCGTTGTGT
CATTTAAGACTGCCTTGTGGTTTTGGATGACCAATGTGCACCCAGTTATG
AACCAAGGTTTTGGTGCAACAATT
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