CF835880

Overview
NameCF835880
Unique NameCF835880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835880_ssr622 microsatellite CF835880_ssr622:622..633. BLAST: Citrus ESTs to Prunus persica proteins V1
CF835880_ssr642 microsatellite CF835880_ssr642:642..653. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.190e-20
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  322 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 516
            +LLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI K+QIM  I DD VSVD L E+
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK 203          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.030e-20
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = -2
Query:  313 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 516
            +LLDVKPWDDETDM KLEE VRS++M GL WGASKLVPVGYGIKK+QI   + DD V  D ++EE++T
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEENIT 211          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.652e-20
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = -2
Query:  322 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 516
            VLLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI K+QIM  I DD VS+D L E+
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK 203          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.716e-20
Identity = 46/65 (70.77%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  322 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 516
            +LLDVKPWDDETDM KLEE VR+V+M GL WG+SKLVPVGYGIKK+QI   + DD V  D L EE
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEE 246          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.719e-19
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = -2
Query:  313 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 516
            +LLDVKPWDDETDM KLEE +RS++M GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEEKIT 210          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  313 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 516
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQIT 208          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  313 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 516
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQIT 208          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  313 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 516
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQIT 208          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  313 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 516
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQIT 208          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.932e-19
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  313 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLT 516
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQIT 208          
The following BLAST results are available for this feature:
BLAST of CF835880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B2_BOMMO1.190e-2072.31Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1B_XENTR2.030e-2069.12Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_DROME2.652e-2072.31Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1D_XENLA7.716e-2070.77Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_XENLA1.719e-1966.18Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]
EF1B_MOUSE2.245e-1966.18Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN2.245e-1966.18Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK2.245e-1966.18Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_BOVIN2.245e-1966.18Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_RABIT2.932e-1966.18Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835880 ID=CF835880; Name=CF835880; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTGGGGCTAGTGTTGGTGCTGTTTGGAATTCCTCTGG
ATGGAATGTCATGGTCAGATAGGTACTCCAGTTCCCCTCCATCAATGACA
ATACCACGAATTGTTCCCCGAGGAAAGCTCACTCTATCCCTTGTGATTGG
AGTTGCAGGATACATAATTCTTTCAGAAATACTGGAGAAGTTTGGCCTCC
CATGAATGCCAGGGATTTGTTGCATAGAGTAACTAAAATCACGGGAAATT
CTGGTTCTGATCCAAGAGTTATGATACAAATTACCCTGCTTTGTTTCATT
GCAGGGCTCAACTGTGAGGTGTTCCTCTATGAGTGAATCCACAGAAACAA
GATCATCAATGATTGTCATCATGATCTGCATCTTCTTAATCCCATAACCG
ACTGGGACCAATTTTGATGCTCCCCAAAAGAGACCCGGCATCTCAACACT
CCTAACTGCCTCTTCTAGCTTTTTCATGTCTGTCTCGTCATCCCAAGGCT
TTACATCCAAAAGTACCGATGATTTTCCACTCTCTTTCTTCTTGGATGAT
TGCTTTTTAGCAGCCTCCCTCTCCTCTGCTGCTTTCTTATCCTCCTCAGT
CTCATCTCCGAAGAGATCCAAATCATCATCATCACCACCTCCAGCAGCAG
CAGGCTTGGCTGCGGCGGCGTCAACTGGAGCACCTTTGCCATCAACTCTC
ACACCAACGGCTTTGCCAGGGAAGCTTGGGGCGATATGTGAAGAAACGCT
GTCGTACCACCTGCTGGCGTTGGGGAAAGAATCAGCAGGTTTCACCAAAA
CGGCAGCGTAGACCTTGATGTCATCT
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