CF835880

Overview
NameCF835880
Unique NameCF835880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.967e-43
Identity = 96/177 (54.24%), Postives = 109/177 (61.58%), Query Frame = -2
Query:  295 DDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 825
            DD+KVYAAV VKP+D+FPNAS+WY+SV+S +A SFPGKAVGV+                              D                            SVL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKK+ IM TI+DDLVS D+LIE+ LT EP NE
Sbjct:   35 DDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNE 211          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 7.172e-42
Identity = 96/180 (53.33%), Postives = 106/180 (58.89%), Query Frame = -2
Query:  286 DDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 825
            DDIKV+AAV  KP   FPNA+RWYD+V++ +A  FPGKAVGV                                                            SVLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKK+QIM+TI+DDLVSVDSLIEEHLT EP NE  Q
Sbjct:   35 DDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQ 214          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.269e-30
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = -2
Query:  295 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 516
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKK+ IMMTI+DDLVSVD+LIE+HLT EP NE
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNE 215          

HSP 2 Score: 74.3294 bits (181), Expect = 9.136e-13
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = -2
Query:  697 DDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVR 825
            DD+KVYAAVL  P D FPNAS+WYDSV+SH+A SFPGKA GVR
Sbjct:   35 DDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.692e-30
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = -2
Query:  286 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 516
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKK+ IM TI+DDLVS+D++IEE LTVEP NE  Q
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.822e-30
Identity = 60/77 (77.92%), Postives = 71/77 (92.21%), Query Frame = -2
Query:  286 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 516
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKK+QI+ TI+DDLVS+D++IEE LTVEP NE  Q
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQ 221          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 6.963e-29
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = -2
Query:  295 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 516
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+DDLVSVDSLIE++   EP NE
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANE 213          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 6.963e-29
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = -2
Query:  295 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 516
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+DDLVSVDSLIE++   EP NE
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANE 216          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.551e-28
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = -2
Query:  295 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNE 516
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKK+QIM+TI+DDLVSVD L+E++LT EP NE
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANE 213          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 2.026e-28
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = -2
Query:  286 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 516
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKK+ IMMTI+DDLVSVD+LIE++LTVEP NE  Q
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQ 221          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.954e-24
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = -2
Query:  286 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNETKQ 516
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKK+QIM+TIIDDL S    IEE L   P NE  Q
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQ 206          
The following BLAST results are available for this feature:
BLAST of CF835880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B2_ARATH4.967e-4354.24Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ7.172e-4253.33Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B1_ARATH1.269e-3086.49Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D2_ARATH3.692e-3079.22Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH4.822e-3077.92Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D2_ORYSJ6.963e-2982.43Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D1_ORYSJ6.963e-2982.43Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR1.551e-2879.73Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU2.026e-2881.82Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_WHEAT3.954e-2474.03Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835880 ID=CF835880; Name=CF835880; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTGGGGCTAGTGTTGGTGCTGTTTGGAATTCCTCTGG
ATGGAATGTCATGGTCAGATAGGTACTCCAGTTCCCCTCCATCAATGACA
ATACCACGAATTGTTCCCCGAGGAAAGCTCACTCTATCCCTTGTGATTGG
AGTTGCAGGATACATAATTCTTTCAGAAATACTGGAGAAGTTTGGCCTCC
CATGAATGCCAGGGATTTGTTGCATAGAGTAACTAAAATCACGGGAAATT
CTGGTTCTGATCCAAGAGTTATGATACAAATTACCCTGCTTTGTTTCATT
GCAGGGCTCAACTGTGAGGTGTTCCTCTATGAGTGAATCCACAGAAACAA
GATCATCAATGATTGTCATCATGATCTGCATCTTCTTAATCCCATAACCG
ACTGGGACCAATTTTGATGCTCCCCAAAAGAGACCCGGCATCTCAACACT
CCTAACTGCCTCTTCTAGCTTTTTCATGTCTGTCTCGTCATCCCAAGGCT
TTACATCCAAAAGTACCGATGATTTTCCACTCTCTTTCTTCTTGGATGAT
TGCTTTTTAGCAGCCTCCCTCTCCTCTGCTGCTTTCTTATCCTCCTCAGT
CTCATCTCCGAAGAGATCCAAATCATCATCATCACCACCTCCAGCAGCAG
CAGGCTTGGCTGCGGCGGCGTCAACTGGAGCACCTTTGCCATCAACTCTC
ACACCAACGGCTTTGCCAGGGAAGCTTGGGGCGATATGTGAAGAAACGCT
GTCGTACCACCTGCTGGCGTTGGGGAAAGAATCAGCAGGTTTCACCAAAA
CGGCAGCGTAGACCTTGATGTCATCT
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