CF835880

Overview
NameCF835880
Unique NameCF835880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.744e-17
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  322 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 516
            V LDVKPWDDET M +LE+AVRS++M GL WG SKLVPVG+G+ K QI + + DD VS+++L EE
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEE 195          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = -2
Query:  322 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 516
            +LLDVKPWDDETDM +LE+ VRS+EM GL WGASKLV VGYGIKK+ I + + D  VS D L E+
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK 197          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.967e-15
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = -2
Query:  322 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEE 516
            ++LDVKPWDDETD+K +E  +R +   GL WGASK VPV +GI+K+ I   + DD VS+D L EE
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEE 237          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.569e-15
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = -2
Query:  361 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTI 516
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLVPVGYGI+K+QI   +
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV 248          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.174e-14
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  331 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSL 516
            V LDVKPWDDETD+ +L   V+++EM GL WGA + +PVG+GIKK+QI + + D LVS+D L
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLDDL 191          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 6.327e-14
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = -2
Query:  331 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSL 516
            V LDVKPWDDET+++++   V+++EM GL WGA + +P+G+GIKK+QI   + DD VS+D L
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL 184          
BLAST of CF835880 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = -2
Query:  307 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVE 516
            +L DVKPWDD  D++ L   + +V+  GL WG  KLVPV +G+KK+Q ++ I DD V  D L E  ++ E
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSDDLEELIMSFE 208          
The following BLAST results are available for this feature:
BLAST of CF835880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B_SCHPO2.744e-1763.08Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1B_DICDI3.584e-1766.15Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1D_DROME1.967e-1555.38Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1D_SHEEP2.569e-1569.23Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1B_CANAL2.174e-1458.06Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST6.327e-1453.23Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR3.838e-1145.7125 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835880 ID=CF835880; Name=CF835880; organism=Citrus sinensis; type=EST; length=826bp
TTTTTTTTTTTTTTTGGGGCTAGTGTTGGTGCTGTTTGGAATTCCTCTGG
ATGGAATGTCATGGTCAGATAGGTACTCCAGTTCCCCTCCATCAATGACA
ATACCACGAATTGTTCCCCGAGGAAAGCTCACTCTATCCCTTGTGATTGG
AGTTGCAGGATACATAATTCTTTCAGAAATACTGGAGAAGTTTGGCCTCC
CATGAATGCCAGGGATTTGTTGCATAGAGTAACTAAAATCACGGGAAATT
CTGGTTCTGATCCAAGAGTTATGATACAAATTACCCTGCTTTGTTTCATT
GCAGGGCTCAACTGTGAGGTGTTCCTCTATGAGTGAATCCACAGAAACAA
GATCATCAATGATTGTCATCATGATCTGCATCTTCTTAATCCCATAACCG
ACTGGGACCAATTTTGATGCTCCCCAAAAGAGACCCGGCATCTCAACACT
CCTAACTGCCTCTTCTAGCTTTTTCATGTCTGTCTCGTCATCCCAAGGCT
TTACATCCAAAAGTACCGATGATTTTCCACTCTCTTTCTTCTTGGATGAT
TGCTTTTTAGCAGCCTCCCTCTCCTCTGCTGCTTTCTTATCCTCCTCAGT
CTCATCTCCGAAGAGATCCAAATCATCATCATCACCACCTCCAGCAGCAG
CAGGCTTGGCTGCGGCGGCGTCAACTGGAGCACCTTTGCCATCAACTCTC
ACACCAACGGCTTTGCCAGGGAAGCTTGGGGCGATATGTGAAGAAACGCT
GTCGTACCACCTGCTGGCGTTGGGGAAAGAATCAGCAGGTTTCACCAAAA
CGGCAGCGTAGACCTTGATGTCATCT
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