CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XANAC (Malate dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=mdh PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.287e-23
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W    FI  V +RG AII+AR           A DHIRDWV GT  G WV+MGV  DGSY +P G+++ FPVT  NG++TIV+ L ID+FS+K +D T  EL EE++
Sbjct:  211 INDQEWNASTFIPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-SGKWVTMGVPSDGSYGIPEGVMFGFPVTTENGKYTIVKDLPIDDFSQKYIDKTLAELEEERS 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_CORJK (Malate dehydrogenase OS=Corynebacterium jeikeium (strain K411) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.287e-23
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = -2
Query:  307 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 636
            D AW+N EFI  V +RG  II+ R           A DH+RDWV GT EG WVS+ +  DGSY +P GL++SFP    +GEW IVQGL I    ++++D   +EL EEKA
Sbjct:  213 DAAWVNDEFIPRVAKRGAEIIEVRGRSSAASAASAALDHMRDWVNGTAEGDWVSVALPSDGSYGIPEGLVFSFPCRSVDGEWEIVQGLEISPAQQERIDANIKELQEEKA 322          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.211e-23
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D AW    FI  V +RG AII+AR           A DHI DWV GT  G WV+MG+   G Y +PA +IY FPV C NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  212 INDAAWNKDVFIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYDIPAEVIYGFPVVCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D+ W    F+  V +RG AII AR           A DH+RDWV GT  G WV+MG+  DGSY +P   I+ FPVT  NGE+ IVQGL ID FS+++++LT +EL EE+
Sbjct:  212 INDEVWNKDVFLPTVGKRGAAIIDARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTIFGFPVTVENGEYKIVQGLEIDAFSQERINLTLKELLEER 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D+ W    FI  V +RG AII+AR           A DH+RDWV GT  G WV+MG+  DGSY +P  ++Y   VTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  210 INDEEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIVYGVAVTCENGEYKRVEGLQIDAFSREKMDNTLNELLEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_PSYWF (Malate dehydrogenase OS=Psychrobacter sp. (strain PRwf-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.401e-22
Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGL-SIDEFSRKKLDLTAEELSEEK 636
            D  W    +I  VQ+RG AII+AR           A  H+R W  GT E  WVSMGVY  G Y +  GLIYSFP TC NG+W IV+GL +  +FS++K+  T +ELSEE+
Sbjct:  210 DRDWYENSYIPSVQKRGAAIIEARGASSAASAANAAIAHMRTWALGTDENDWVSMGVYSQGEYGIAKGLIYSFPCTCSNGDWKIVEGLDTSSDFSQEKMKATEQELSEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_FRAAA (Malate dehydrogenase OS=Frankia alni (strain ACN14a) GN=mdh PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.401e-22
Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V D  W+  EFI  V +RG  II+ R           A DH+  WV GTPEG W S  +  DGSY VP GLI SFPVT   G++ IVQGL +D FSR+K+D +  EL+EE+
Sbjct:  210 VGDQKWIAEEFIPRVAKRGAEIIEVRGASSAASAASAAIDHVYTWVNGTPEGDWTSAAIPSDGSYGVPEGLISSFPVTAAGGKFEIVQGLELDAFSREKIDASVRELAEER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_FRASC (Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 55/111 (49.55%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V D AW+  EFI  V +RG  II+ R           A DHI  WV GTP G W S  +  DGSY VP GLI SFPVT   G + IVQGL +D FSR+K+D +  EL+EE+
Sbjct:  210 VGDQAWIADEFIPRVAKRGAEIIEVRGASSAASAASAAIDHIFTWVNGTPAGDWTSAAIPSDGSYGVPEGLISSFPVTASGGRFEIVQGLELDAFSREKIDASVRELAEER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D AW    FI  V +RG AII+AR           A DH+RDW+ G+  G W++MGV  DGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  211 INDQAWNANSFIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_XYLFM (Malate dehydrogenase OS=Xylella fastidiosa (strain M12) GN=mdh PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D AW    FI  V +RG AII+AR           A DH+RDW+ G+  G W++MGV  DGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  211 INDQAWNANSFIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH_XANAC6.287e-2349.11Malate dehydrogenase OS=Xanthomonas axonopodis pv.... [more]
MDH_CORJK6.287e-2348.18Malate dehydrogenase OS=Corynebacterium jeikeium (... [more]
MDH_POLNS8.211e-2348.21Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_JANMA1.072e-2247.75Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_BURP81.072e-2247.75Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDH_PSYWF1.401e-2248.18Malate dehydrogenase OS=Psychrobacter sp. (strain ... [more]
MDH_FRAAA1.401e-2248.65Malate dehydrogenase OS=Frankia alni (strain ACN14... [more]
MDH_FRASC1.829e-2249.55Malate dehydrogenase OS=Frankia sp. (strain CcI3) ... [more]
MDH_XYLFT2.389e-2247.32Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLFM2.389e-2247.32Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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