CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_RALEH (Malate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.814e-20
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W N  F+  V +RG AII+AR           A DH+RDWV GT  G  V+MG+  +G Y +PA  ++ +PVT  NG++ IV+GL ID +S++K+++T  EL EEKA
Sbjct:  210 INDPVWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKVVTMGIPSNGEYGIPADTMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLNELEEEKA 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_CUPTR (Malate dehydrogenase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W N  F+  V +RG AII+AR           A DH+RDWV G+  G  V+MG+  +G Y +PA  ++ +PVT  NG++ IV+GL ID +S++K+++T +EL EEKA
Sbjct:  210 INDPVWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKVVTMGIPSNGEYGIPADTMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLKELEEEKA 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 45/112 (40.18%), Postives = 71/112 (63.39%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W N  F+  V +RG AII+AR           A DH+RDWV G+  G  V+MG+  +G Y++P  +++ FPVT  NG++ +V+G  +D +SR+K+++T +EL EE+A
Sbjct:  212 INDPVWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKIVTMGIPSNGDYEIPQDVMFGFPVTTANGKYEVVKGFEVDAYSREKINITLKELEEERA 322          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_RALPJ (Malate dehydrogenase OS=Ralstonia pickettii (strain 12J) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W N  F+  V +RG AII+AR           A DH+RDWV GT  G  V+MG+  +G Y +P  +++ FPVT  NG++ IV+GL IDE+S+ K+ +T +EL  E+A
Sbjct:  212 INDPVWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKIVTMGIPSNGEYGIPKDVMFGFPVTTENGKYKIVEGLEIDEYSQGKIKITLDELEGERA 322          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHB_DICDI (Probable malate dehydrogenase 2, mitochondrial OS=Dictyostelium discoideum GN=mdhB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.893e-19
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  313 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRN-GEWTIVQGLSIDEFSRKKLDLTAEELSEE 642
            + D  W+   FI  VQQRG AII AR           A DH+RDW +GT  G W SM +Y +G Y    GL +SFPV   N G++ IV+GL +D+FS+++ D T +EL  E
Sbjct:  230 INDQKWVKDNFIPTVQQRGAAIIAARGLSSAASAASAAIDHMRDWTYGT-NGQWTSMAIYSEGEYGADKGLYFSFPVIVDNKGKYEIVKGLKLDQFSQERFDATRKELLSE 339          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_METPP (Malate dehydrogenase OS=Methylibium petroleiphilum (strain PM1) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-19
Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  W    F+  V +RG AII+AR           A DH+RDW  GT  G WV+MGV  +G Y +P  +++ FPVTC NGE+ IV GL+ID FS++ ++ T  EL  E+
Sbjct:  212 INDQVWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGAWVTMGVPSNGEYGIPKDVMFGFPVTCANGEYKIVDGLAIDAFSQECINKTLAELQGEQ 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_LEPCP (Malate dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=mdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-19
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + DD W    F+  V +RG AII AR           A DH+RDW  GT  G WV+MGV   G Y +PA  ++ +PVTC  GE+ IV+GL ID FS++ ++ T  EL  EK
Sbjct:  212 INDDVWNRDVFLPTVGKRGAAIIAARGVSSAASAANAAIDHMRDWALGT-NGAWVTMGVPSKGEYGIPAETMFGYPVTCEGGEYKIVEGLPIDAFSQECINKTLAELEGEK 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  WL  +FI  V +RG AII+AR           A DHI DWV GTP+G W S+ +   G+Y V  GL+ SFP     G W IV+GL I+ FSR ++D +  EL  E+
Sbjct:  215 DTRWLTDDFIPTVARRGTAIIEARGASSAASAANGAIDHIDDWVHGTPDGDWTSVALPSPGAYGVDEGLVCSFPCRSVGGRWEIVEGLDINPFSRARIDASVAELRTER 323          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W    F+  V +RG AII AR           A DH+RDW  GT  G WV+MG+  DG Y +P   ++ FPVTC  GE+ +VQ L ID FS++ ++ T +EL +E+A
Sbjct:  212 INDQDWNANTFLPTVGKRGAAIIAARGVSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGQYGIPKETMFGFPVTCEGGEYKVVQNLPIDAFSQECINKTLKELQDEQA 322          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_ACICJ (Malate dehydrogenase OS=Acidiphilium cryptum (strain JF-5) GN=mdh PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D+AW    FI  V +RG A+I+AR           A D +RDWV G+ +G WVSM +  DGSY +P G+++  PVT + G  T V  L+ID F++ +LD+T  EL EE+
Sbjct:  210 INDEAWNRDVFIPTVGKRGAAVIEARGASSAASAANAAIDQVRDWVVGS-DGRWVSMAIPSDGSYGIPEGIMFGVPVTTQGGVVTRVPNLAIDAFAQSRLDITLNELKEER 319          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH_RALEH3.814e-2043.75Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]
MDH_CUPTR8.497e-2042.86Malate dehydrogenase OS=Cupriavidus taiwanensis (s... [more]
MDH_RALSO1.449e-1940.18Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDH_RALPJ1.449e-1942.86Malate dehydrogenase OS=Ralstonia pickettii (strai... [more]
MDHB_DICDI1.893e-1944.14Probable malate dehydrogenase 2, mitochondrial OS=... [more]
MDH_METPP2.472e-1943.24Malate dehydrogenase OS=Methylibium petroleiphilum... [more]
MDH_LEPCP2.472e-1944.14Malate dehydrogenase OS=Leptothrix cholodnii (stra... [more]
MDH_MYCVP4.217e-1944.04Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH1_RHOFD4.217e-1941.96Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]
MDH_ACICJ1.227e-1842.34Malate dehydrogenase OS=Acidiphilium cryptum (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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