CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  313 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 642
            + D+ W    FI  V QRG AII+AR           A D +RDW+FG+ +G WVSM V  DGSY +  GL++  PV C  G +  V+ + ID F+R+++DL+  EL EE
Sbjct:  210 INDENWYRESFIPKVAQRGTAIIEARGASSAASAANAAIDQMRDWIFGS-DGRWVSMSVPSDGSYGIAPGLMFGVPVICDGGRYERVKDIGIDAFARQRIDLSVRELQEE 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_ACIAC (Malate dehydrogenase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  W    F+  V +RG AII+AR           A DH+RDW  G+  G WV+MGV   G Y +P G+++ FPV   NGE+ IV+GL ID FS+++++ T  EL  E+
Sbjct:  212 INDQVWNADVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGS-NGKWVTMGVPSKGEYGIPEGIVFGFPVITENGEYKIVEGLEIDAFSQERINKTLAELQGEQ 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_RALME (Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.093e-18
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            + D  W N  F+  V +RG AII+AR           A DH+ DWV G+  G  V+MG+  +G Y +P  +++ +PVT  NG++ IV+GL ID +S++K+++T +EL EE+A
Sbjct:  210 INDPVWNNDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHVHDWVLGS-NGKVVTMGIPSNGEYGIPNDVMFGYPVTTANGKYEIVKGLEIDAYSQEKINITLKELEEERA 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_COREF (Malate dehydrogenase OS=Corynebacterium efficiens GN=mdh PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  W   EFI  V +RG  II+ R           A DH+RDW+ GT    W S  +   G+Y +P G+I   P   RNGEW +V+GL I++F R ++D   EEL  E+
Sbjct:  210 DHDWYVNEFIPRVAKRGAEIIEVRGKSSAASAASSAVDHMRDWIQGTET--WASAAIPSTGAYGIPEGIILGLPTVSRNGEWEVVEGLEINDFQRARIDANVEELQGER 316          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_CORDI (Malate dehydrogenase OS=Corynebacterium diphtheriae GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.558e-16
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  W  GEFI  V +RG  II+ R           A DH+ DW+ GT +G W +  +  DGSY VP GLI+ FP    +G+W IVQ L + +F +  +     EL EE+
Sbjct:  211 DHDWYTGEFIPRVAKRGAEIIEVRGKSSAASAASSAIDHMHDWINGT-DGQWRTAAIPSDGSYGVPEGLIFGFPTISEDGQWKIVQDLELSDFQKDGIARNVTELEEER 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.364e-16
Identity = 44/109 (40.37%), Postives = 56/109 (51.38%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  W   EFI  V  RG  II+ R           A DH+RDWV GT    W S  +   G+Y +P G+    P   RNGEW IV+GL I +F R ++D  A+EL  E+
Sbjct:  215 DHDWYVEEFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTEA--WSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAER 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.364e-16
Identity = 44/109 (40.37%), Postives = 56/109 (51.38%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  W   EFI  V  RG  II+ R           A DH+RDWV GT    W S  +   G+Y +P G+    P   RNGEW IV+GL I +F R ++D  A+EL  E+
Sbjct:  215 DHDWYVEEFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTEA--WSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAER 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_DESPS (Malate dehydrogenase OS=Desulfotalea psychrophila GN=mdh PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDG-SYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            ++ W     I  +QQRG A+IKAR           A DH+R+WV G+  G WVSMGVY  G SY +   +++S PV C +G+W  V GL +  F R  L+ T  EL  E+
Sbjct:  210 ENNWHGDNLIPIIQQRGAAVIKARGASSAASAASAAIDHMRNWVLGSG-GKWVSMGVYSRGNSYGLDEDIMFSLPVICEDGDWREVAGLELSSFQRAMLEATEAELQAER 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.270e-15
Identity = 47/113 (41.59%), Postives = 63/113 (55.75%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGS-YKVPAGLIYSFPVTC-RNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  WL  +FI  VQ+RG AII+AR             D +RD +  TP G W S  +  DG+ Y +  GLI+SFP    +NGE +IV GL  D F  +K+ LT +EL EE+
Sbjct:  209 IPDRQWLEKDFIESVQKRGAAIIQARGKSSAASAASALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLIFSFPCRVKKNGELSIVSGLKWDAFLEEKIKLTEQELKEER 321          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH2_RHOFD (Malate dehydrogenase 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = -2
Query:  313 AWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 630
            AW +   +  V +RG AI+ AR           A D +RDW  GT  G W +MGV  DG+Y VPAGL++ FPV     ++ IV GL++D F+R  +D+   EL+ E
Sbjct:  217 AWHHDTLVRTVDKRGEAILAARGLYAEASAASAAIDQMRDWWLGT-RGEWTTMGVVSDGAYGVPAGLVFGFPVITDCRDYRIVPGLAVDAFARGMIDVNVRELTAE 321          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH2_BURTA1.227e-1842.73Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]
MDH_ACIAC1.602e-1841.44Malate dehydrogenase OS=Acidovorax avenae subsp. c... [more]
MDH_RALME2.093e-1840.18Malate dehydrogenase OS=Ralstonia metallidurans (s... [more]
MDH_COREF8.793e-1739.45Malate dehydrogenase OS=Corynebacterium efficiens ... [more]
MDH_CORDI2.558e-1639.45Malate dehydrogenase OS=Corynebacterium diphtheria... [more]
MDH_CORGL4.364e-1640.37Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_CORGB4.364e-1640.37Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_DESPS5.699e-1640.91Malate dehydrogenase OS=Desulfotalea psychrophila ... [more]
MDH_PARUW1.270e-1541.59Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH2_RHOFD2.166e-1540.57Malate dehydrogenase 2 OS=Rhodoferax ferrireducens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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