CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_LEPIN (Malate dehydrogenase OS=Leptospira interrogans GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.394e-14
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  WL G+FI  VQQRG  IIKAR             D +R  +  T  G   S  V  DGSY    GLI+ FP+     +  I+QG+S+++F+++K  +T EEL  E+
Sbjct:  209 ISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGSYGAEKGLIFGFPLKSDGKKVEIIQGISLNDFAKEKFKITHEELVSER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_LEPIC (Malate dehydrogenase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mdh PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.394e-14
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  WL G+FI  VQQRG  IIKAR             D +R  +  T  G   S  V  DGSY    GLI+ FP+     +  I+QG+S+++F+++K  +T EEL  E+
Sbjct:  209 ISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGSYGAEKGLIFGFPLKSDGKKVEIIQGISLNDFAKEKFKITHEELVSER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH1_BURVG (Malate dehydrogenase 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.394e-14
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = -2
Query:  313 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 642
            V D+ W    FI  V +RG AII+AR           A D +RDW+ G+  G WVSM +   G Y +P GL++  P  C  G + +V  L ID  +R ++D +  EL +E
Sbjct:  210 VGDERWYLDTFIPEVARRGTAIIEARGASSAASAANAAIDQMRDWIRGSG-GRWVSMSIVSGGEYGIPRGLMFGMPTICSEGRYRVVPDLEIDALARARIDASVAELVDE 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_LEPBP (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.084e-14
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  WL G+FI+ VQ+RG AII AR             D + + V  T  G W S   + +G Y V  GLI+ +P+     +  IV GL I+ F ++K D+T  EL EE+
Sbjct:  209 ISDHDWLKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGEYGVDKGLIFGYPLKSDGKKVEIVTGLEINAFGKEKFDITHNELKEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_LEPBA (Malate dehydrogenase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mdh PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.084e-14
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  WL G+FI+ VQ+RG AII AR             D + + V  T  G W S   + +G Y V  GLI+ +P+     +  IV GL I+ F ++K D+T  EL EE+
Sbjct:  209 ISDHDWLKGDFISTVQKRGAAIIAARGASSAASAANAVVDTVHNIVTPTKPGDWFSAACHSNGEYGVDKGLIFGYPLKSDGKKVEIVTGLEINAFGKEKFDITHNELKEER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_MAGSM (Malate dehydrogenase OS=Magnetococcus sp. (strain MC-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCR-NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D AWL   F+  VQ RG A+IKAR           A DH+R  +  TP G      V  +G+Y V AGLI   P+T   +G+W+IV+G+ +  F + K D   +EL  E+
Sbjct:  207 IADAAWLENAFMPTVQNRGAAVIKARGASSAASAANAALDHVRSLITPTPAGDTFCAAVMANGAYGVDAGLIAGMPLTSTGHGDWSIVEGVPMSPFIKGKFDAVLDELRRER 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_RUBXD (Malate dehydrogenase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = -2
Query:  310 WLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTC-RNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 627
            W   E+I  V +RG  II+AR           A DH+RDW+ G       SM V   G Y V  GL+ SFPV     GE+ I +GL + +F+R KL++T  EL EE+
Sbjct:  211 WYENEYIPRVGKRGAEIIEARGASSAASAANAAIDHVRDWMLGADS--LHSMAVASSGQYGVEEGLVSSFPVRLPGGGEYEIPEGLEVGDFARSKLEITIGELKEER 315          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_LEPBL (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  WL G+FI  VQQRG  IIKAR             D +R  +  T  G   S  +  DGSY    GLI+ FP+     +  IVQGL  ++F+++K   T +EL  E+
Sbjct:  209 ISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRAIITPTASGDAFSAAIASDGSYGTEKGLIFGFPLKSDGKKVGIVQGLPFNDFAKEKFKTTHDELISER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_LEPBJ (Malate dehydrogenase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.006e-12
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D  WL G+FI  VQQRG  IIKAR             D +R  +  T  G   S  +  DGSY    GLI+ FP+     +  IVQGL  ++F+++K   T +EL  E+
Sbjct:  209 ISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRAIITPTASGDAFSAAIASDGSYGTEKGLIFGFPLKSDGKKVGIVQGLPFNDFAKEKFKTTHDELISER 319          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_LEGPH (Malate dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=mdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.241e-12
Identity = 39/111 (35.14%), Postives = 55/111 (49.55%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            + D+ WL   F++ VQQRG A+IKAR               +   V  TP G   SM     G Y V  GLI+SFP    +GE  +V+ L  ++F R++ + T  EL  E+
Sbjct:  210 INDETWLKETFVSTVQQRGAAVIKARGSSSAASAANAIITGVNHLVTDTPAGESFSMCRRSKGEYGVDEGLIFSFPCRREHGELKVVENLEFNDFGRERFNTTLNELRSER 320          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH_LEPIN2.394e-1437.84Malate dehydrogenase OS=Leptospira interrogans GN=... [more]
MDH_LEPIC2.394e-1437.84Malate dehydrogenase OS=Leptospira interrogans ser... [more]
MDH1_BURVG2.394e-1437.27Malate dehydrogenase 1 OS=Burkholderia vietnamiens... [more]
MDH_LEPBP4.084e-1436.94Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_LEPBA4.084e-1436.94Malate dehydrogenase OS=Leptospira biflexa serovar... [more]
MDH_MAGSM6.967e-1437.50Malate dehydrogenase OS=Magnetococcus sp. (strain ... [more]
MDH_RUBXD1.006e-1240.19Malate dehydrogenase OS=Rubrobacter xylanophilus (... [more]
MDH_LEPBL1.006e-1236.94Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEPBJ1.006e-1236.94Malate dehydrogenase OS=Leptospira borgpetersenii ... [more]
MDH_LEGPH2.241e-1235.14Malate dehydrogenase OS=Legionella pneumophila sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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