CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGS-YKVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            +KD+ WL  EF   VQ+RGG +I+               D IR  +  TPEG W S GVY +G+ Y +   +++S P  CR   +G++ +V  +  D++ R+KL  T  EL  EK
Sbjct:  303 IKDNKWLEEEFTEKVQKRGGVLIQKWGRSSAASTSVSIVDAIRSLITPTPEGDWFSSGVYTNGNPYGIAEDIVFSMP--CRSKGDGDYELVNDVIFDDYLRQKLAKTEAELLAEK 415          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGS-YKVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            +KD  WL  EF   +Q+RGGA+I+               D I+  V  TPEG W S  VY +G+ Y +   L++S P  CR   +G++ +V+ +  D++ R+++  + EEL  EK
Sbjct:  302 IKDHKWLEEEFTVMIQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSSAVYTNGNPYGIAEDLVFSMP--CRSKGDGDYELVKDVVFDDYLRQRIKKSEEELLAEK 414          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 40/115 (34.78%), Postives = 59/115 (51.30%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGS-YKVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            ++D  WL  EF   VQ RGG +IK               D IR  V  TPEG W S GVY +G+ Y +   +++S P  CR   +G++  V+ +  D++  KK+  + +EL  EK
Sbjct:  315 IRDRKWLEDEFTNMVQTRGGVLIKKWGRSSAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMP--CRSKGDGDYEFVKDVIFDDYLSKKIKKSEDELLAEK 427          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDHP_PEA8.516e-1235.65Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_MESCR3.236e-1133.91Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_FLABI5.520e-1134.78Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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