CF836200

Overview
NameCF836200
Unique NameCF836200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_SACD2 (Malate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=mdh PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29
Identity = 62/106 (58.49%), Postives = 70/106 (66.04%), Query Frame = -2
Query:  310 WLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 627
            W   +FI  VQQRG AIIKAR           A  H+RDW  GTPE  WVSMGVY DGSY +  GLIYSFP  C+NG+W IVQGL+IDEFSR K+  T  EL EE+
Sbjct:  213 WYENDFIPTVQQRGAAIIKARGASSAASAANAAIFHMRDWALGTPENDWVSMGVYSDGSYGIEEGLIYSFPCVCKNGDWEIVQGLTIDEFSRAKMTATENELKEER 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.495e-29
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D AW   ++I  VQQRG AII AR           A +HIRDW  GTP   WVSMGVY DGSY +  GLIYSFP  C+NG+W IVQGL I+EFSR K+  T +EL EE+
Sbjct:  210 DQAWYESDYIPTVQQRGAAIIAARGASSAASAANAAINHIRDWALGTPANDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLDINEFSRAKMTATEKELQEER 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_DEIGD (Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.308e-28
Identity = 61/109 (55.96%), Postives = 73/109 (66.97%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  W   E+I  V +RG AII+AR           A DH+RDW  GTPEG WVSM V  DGSY +P GLIY FPV CRNG++ IVQGL I +FSR+K+D TA+EL EE+
Sbjct:  216 DREWYEKEYIPTVAKRGAAIIEARGASSAASAASAAIDHMRDWALGTPEGEWVSMAVPSDGSYGIPEGLIYGFPVRCRNGQYEIVQGLEISDFSRQKMDATAKELEEER 324          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_TERTT (Malate dehydrogenase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.708e-28
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  W   E+I  VQQRG AIIKAR           A  H+RDW  G+PEG WVSMGVY DGSY +  GLIYSFP  C+NG+W IVQGLSIDEFS+ ++  T  EL  E+
Sbjct:  210 DSTWYAEEYIPTVQQRGAAIIKARGASSAASAANAAIFHMRDWALGSPEGDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLSIDEFSQARMTATETELQGER 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_ALHEH (Malate dehydrogenase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.107e-27
Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = -2
Query:  310 WLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 627
            W   +FI  VQQRG AIIKAR           A DHIRDWV GTPEG W SM V  DGSY +  G+IYS+P  CRNG++ IVQ L IDEFSR+K+  T +EL EE+
Sbjct:  213 WYENDFIPTVQQRGAAIIKARGASSAASAASSAIDHIRDWVLGTPEGEWTSMAVPSDGSYGIEKGIIYSYPCVCRNGDYEIVQDLEIDEFSREKMQATEKELVEER 318          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_MYCPA (Malate dehydrogenase OS=Mycobacterium paratuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 59/111 (53.15%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V D  W+  +FI  V +RG AII AR             D  RDW+ GTP G WVSM V  DGSY VP GLI SFPVT ++G+WTIVQGL IDEFSR ++D T  EL++E+
Sbjct:  210 VGDQNWIENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_MYCA1 (Malate dehydrogenase OS=Mycobacterium avium (strain 104) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 59/111 (53.15%), Postives = 71/111 (63.96%), Query Frame = -2
Query:  310 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 642
            V D  W+  +FI  V +RG AII AR             D  RDW+ GTP G WVSM V  DGSY VP GLI SFPVT ++G+WTIVQGL IDEFSR ++D T  EL++E+
Sbjct:  210 VGDQNWIENDFIPTVAKRGAAIIDARGASSAASAASATTDAARDWLLGTPAGDWVSMAVISDGSYGVPEGLISSFPVTTKDGDWTIVQGLEIDEFSRSRIDKTTAELADER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.176e-27
Identity = 60/109 (55.05%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  310 DDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 636
            D  W   E+I  V +RG AII+AR           A DH+RDW  GT EG WVSMG+  DGSY VP GLIY FPVT ++G++ IVQGL I EFSR K+D TA EL EE+
Sbjct:  212 DRTWYEQEYIPTVAKRGAAIIEARGASSAASAASAAIDHMRDWALGTSEGEWVSMGIPSDGSYGVPEGLIYGFPVTVKDGKYQIVQGLEISEFSRGKMDATARELEEER 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_ARTAT (Malate dehydrogenase OS=Arthrobacter aurescens (strain TC1) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.176e-27
Identity = 58/112 (51.79%), Postives = 71/112 (63.39%), Query Frame = -2
Query:  307 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 642
            V D  W+  EFI  V  RG AII+AR             D  RDW+ GTPEG WVSM V  DGSY VP GL+YS+PVT   G W IV+GL +++FSR+K+D TA EL +E+A
Sbjct:  209 VNDQDWIENEFIPTVAGRGAAIIEARGASSAASAASATIDAARDWLLGTPEGDWVSMAVASDGSYGVPEGLMYSYPVTTSGGNWEIVEGLEVNDFSRRKMDATAAELFDERA 320          
BLAST of CF836200 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  313 VKDDAWLNGEFITPVQQRGGAIIKARKXXXXXXXXXXACDHIRDWVFGTPEGPWVSMGVYFDGSYKVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 642
            +KD  W+   FI  VQ RG  +I+AR             DH+RDW+FGT +  W++MG+  DGSYK+P G+IY FPV C+NG   IVQGL I  FSR +LD+  +EL++E
Sbjct:  209 IKDQTWVENSFIPTVQNRGAVVIEARGLSSAASAANAIIDHMRDWIFGTRDDDWITMGILSDGSYKIPKGVIYGFPVVCKNGGRKIVQGLEISPFSRTRLDIAYDELTQE 318          
The following BLAST results are available for this feature:
BLAST of CF836200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
MDH_SACD22.018e-2958.49Malate dehydrogenase OS=Saccharophagus degradans (... [more]
MDH_CELJU4.495e-2955.96Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]
MDH_DEIGD1.308e-2855.96Malate dehydrogenase OS=Deinococcus geothermalis (... [more]
MDH_TERTT1.708e-2855.96Malate dehydrogenase OS=Teredinibacter turnerae (s... [more]
MDH_ALHEH1.107e-2756.60Malate dehydrogenase OS=Alkalilimnicola ehrlichei ... [more]
MDH_MYCPA5.495e-2753.15Malate dehydrogenase OS=Mycobacterium paratubercul... [more]
MDH_MYCA15.495e-2753.15Malate dehydrogenase OS=Mycobacterium avium (strai... [more]
MDH_DEIDV7.176e-2755.05Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_ARTAT7.176e-2751.79Malate dehydrogenase OS=Arthrobacter aurescens (st... [more]
MDH_NITEU1.599e-2647.27Malate dehydrogenase OS=Nitrosomonas europaea GN=m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02J08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF836200 ID=CF836200; Name=CF836200; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAAACAATAAAACTGTTATTGATAG
TTTGATACATAAATCACAAGGGGCATTTAATATCCATTTATCCAGGAAAA
GTAACAAAACTCCAAAATCCCGATATTCAAATGCAAAAATAGCAACATAA
AATGGAAAGGCTTCTCCATCATCAATGGTTCCTCCAGGTTTCAACAATGG
TTTTATTCAAAACTGTAACTCTACCAACTACTCAAACAAAGCTAAGGGCC
TTGGTAACACCCTATTGAAGGGAAAAAAGCTTTTAAAAAAAACTTGAGTA
TGCGAGGGCCTTCTCCTCGGAAAGCTCCTCTGCTGTCAAGTCCAACTTCT
TCCTTGAAAATTCATCAATGCTGAGTCCTTGAACAATTGTCCATTCCCCG
TTGCGGCAGGTTACTGGGAATGAGTAAATGAGCCCAGCTGGTACTTTGTA
TGAACCATCAAAGTATACCCCCATGGAAACCCAAGGGCCCTCAGGAGTTC
CAAAAACCCAATCACGGATATGGTCACAAGCAAAGCTAGCAGCAAACAGA
GCACTCGAAAGCTTTCTGGCTTTGATGATTGCACCACCACGTTGTTGGAC
TGGGGTTATGAATTCTCCATTCAACCATGCATCATCCTTGACA
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